RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 VIL1P09327 827 aaKnown RBP13.89□□□□□ -0.19
LINC00540-203ENST00000631321 GUCY2CP25092 1073 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 MYBPC2Q14324 1141 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 DRAP1Q14919 205 aaPredicted RBP13.89□□□□□ -0.19
LINC00540-203ENST00000631321 CEP55Q53EZ4 464 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 KIAA1755Q5JYT7 1200 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 HS2ST1Q7LGA3 356 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 SPICE1Q8N0Z3 855 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 SH2D3CQ8N5H7 860 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 RFFLQ8WZ73 363 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 ZFP91Q96JP5 570 aaPredicted RBP13.89□□□□□ -0.19
LINC00540-203ENST00000631321 ATP6V1G3Q96LB4 118 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 CSRNP1Q96S65 589 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 WDR11Q9BZH6 1224 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 EHMT1Q9H9B1 1298 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 ARHGEF10LQ9HCE6 1279 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 DNAJC12Q9UKB3 198 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 PLA2G6O60733 806 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 PPP1R37O75864 691 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 CCT5P48643 541 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 PPATQ06203 517 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 COG2Q14746 738 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 EFCAB13Q8IY85 973 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 FLAD1Q8NFF5 587 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 TMEM174Q8WUU8 243 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 LRRC45Q96CN5 670 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 INTS2Q9H0H0 1204 aaKnown RBP13.89□□□□□ -0.19
LINC00540-203ENST00000631321 DIS3Q9Y2L1 958 aaKnown RBP13.89□□□□□ -0.19
LINC00540-203ENST00000631321 FRMD4BQ9Y2L6 1034 aa13.89□□□□□ -0.19
LINC00540-203ENST00000631321 H0YGN5 161 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 KRIT1O00522 736 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 EBAG9O00559 213 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 ZBTB39O15060 712 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 GAS7O60861 476 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 CFBP00751 764 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 CCDC172P0C7W6 258 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 RFX1P22670 979 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 ECE1P42892 770 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 CBWD6Q4V339 395 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 CBWD3Q5JTY5 395 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 CBWD5Q5RIA9 395 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 DAAM2Q86T65 1068 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 FAM178BQ8IXR5 827 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 PRMT6Q96LA8 375 aaPredicted RBP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 AP1M1Q9BXS5 423 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 TMBIM4Q9HC24 238 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 WRAP73Q9P2S5 460 aaPredicted RBP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 PLAAQ9Y263 795 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 MRPL11Q9Y3B7 192 aaKnown RBP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 NFS1Q9Y697 457 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 SRRM3A6NNA2 597 aaPredicted RBP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 TMCO5BA8MYB1 307 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 CHMP2AO43633 222 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 SETQ01105 290 aaPredicted RBP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 POU5F1Q01860 360 aaKnown RBP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 PDCLQ13371 301 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 KCTD16Q68DU8 428 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 SLC30A10Q6XR72 485 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 GLYCTKQ8IVS8 523 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 ACER1Q8TDN7 264 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 DEFB129Q9H1M3 183 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 UNC45AQ9H3U1 944 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 QTRT2Q9H974 415 aaKnown RBP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 XPO5Q9HAV4 1204 aaKnown RBP eCLIP13.88□□□□□ -0.19
LINC00540-203ENST00000631321 GOPCQ9HD26 462 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 APEX2Q9UBZ4 518 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 AMFRQ9UKV5 643 aa13.88□□□□□ -0.19
LINC00540-203ENST00000631321 EP400Q96L91 3159 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 DDX3YO15523 660 aaKnown RBP13.87□□□□□ -0.19
LINC00540-203ENST00000631321 BUB1BO60566 1050 aaPredicted RBP13.87□□□□□ -0.19
LINC00540-203ENST00000631321 CPP00450 1065 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 NR1D1P20393 614 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 HSD17B3P37058 310 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 MAPK7Q13164 816 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 HLTFQ14527 1009 aaKnown RBP eCLIP13.87□□□□□ -0.19
LINC00540-203ENST00000631321 KIF22Q14807 665 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 UAP1Q16222 522 aaPredicted RBP13.87□□□□□ -0.19
LINC00540-203ENST00000631321 MAATS1Q7Z4T9 603 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 SLC35G2Q8TBE7 412 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 CHURC1Q8WUH1 139 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 PPM1EQ8WY54 764 aa13.87□□□□□ -0.19
LINC00540-203ENST00000631321 RNPC3Q96LT9 517 aaKnown RBP13.87□□□□□ -0.19
LINC00540-203ENST00000631321 DDX47Q9H0S4 455 aaKnown RBP13.87□□□□□ -0.19
LINC00540-203ENST00000631321 ITGA4P13612 1032 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 ODR4Q5SWX8 454 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 KSR1Q8IVT5 923 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 CCDC26Q8TAB7 109 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 LMO3Q8TAP4 145 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 NEK9Q8TD19 979 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 C7orf43Q8WVR3 580 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 ZNF577Q9BSK1 485 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 RBBP6Q7Z6E9 1792 aaKnown RBP13.86□□□□□ -0.19
LINC00540-203ENST00000631321 ATXN2Q99700 1313 aaKnown RBP13.86□□□□□ -0.19
LINC00540-203ENST00000631321 A0A087WUV0 522 aaPredicted RBP13.86□□□□□ -0.19
LINC00540-203ENST00000631321 CYP2J2P51589 502 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 MYL7Q01449 175 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 BFSP1Q12934 665 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 ITGB3BPQ13352 177 aaPredicted RBP13.86□□□□□ -0.19
LINC00540-203ENST00000631321 MTMR3Q13615 1198 aa13.86□□□□□ -0.19
LINC00540-203ENST00000631321 AOC3Q16853 763 aa13.86□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms