RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 DBR1Q9UK59 544 aaKnown RBP16.67■□□□□ 0.26
PNKP-218ENST00000625299 FAM186AA6NE01 2351 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 VPS13AQ96RL7 3174 aa16.67■□□□□ 0.26
PNKP-218ENST00000625299 SMCO2A6NFE2 343 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 NT5C1B-RDH14C9J2C7 533 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 FAM86B1E9PN63 330 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 FAM86B2P0C5J1 330 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 NBL1P41271 181 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 MTHFRP42898 656 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 NLRP11P59045 1033 aaKnown RBP16.66■□□□□ 0.26
PNKP-218ENST00000625299 AP3B2Q13367 1082 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 CLLU1OSQ5K130 101 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 ASTLQ6HA08 431 aaPredicted RBP16.66■□□□□ 0.26
PNKP-218ENST00000625299 KANK3Q6NY19 840 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 ECHDC2Q86YB7 292 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 SLC39A11Q8N1S5 342 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 LRRC71Q8N4P6 559 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 HELQQ8TDG4 1101 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 BBXQ8WY36 941 aaPredicted RBP16.66■□□□□ 0.26
PNKP-218ENST00000625299 SCLT1Q96NL6 688 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 MAP7D2Q96T17 732 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 LIMD1Q9UGP4 676 aa16.66■□□□□ 0.26
PNKP-218ENST00000625299 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP16.65■□□□□ 0.26
PNKP-218ENST00000625299 IPO5O00410 1097 aaKnown RBP16.65■□□□□ 0.26
PNKP-218ENST00000625299 SLC27A2O14975 620 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 BMS1Q14692 1282 aaKnown RBP16.65■□□□□ 0.26
PNKP-218ENST00000625299 JAKMIP3Q5VZ66 844 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 EFCAB12Q6NXP0 572 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 FLCNQ8NFG4 579 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 AUTS2Q8WXX7 1259 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 NKD2Q969F2 451 aaPredicted RBP16.65■□□□□ 0.26
PNKP-218ENST00000625299 ZNF577Q9BSK1 485 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 GABBR1Q9UBS5 961 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 CEP131Q9UPN4 1083 aa16.65■□□□□ 0.26
PNKP-218ENST00000625299 DHX15O43143 795 aaKnown RBP16.64■□□□□ 0.25
PNKP-218ENST00000625299 CXCL14O95715 111 aa16.64■□□□□ 0.25
PNKP-218ENST00000625299 FGFR4P22455 802 aa16.64■□□□□ 0.25
PNKP-218ENST00000625299 ALDH7A1P49419 539 aaKnown RBP16.64■□□□□ 0.25
PNKP-218ENST00000625299 RTN1Q16799 776 aa16.64■□□□□ 0.25
PNKP-218ENST00000625299 MCTP2Q6DN12 878 aa16.64■□□□□ 0.25
PNKP-218ENST00000625299 NIPA1Q7RTP0 329 aa16.64■□□□□ 0.25
PNKP-218ENST00000625299 TMEM169Q96HH4 297 aa16.64■□□□□ 0.25
PNKP-218ENST00000625299 RBM28Q9NW13 759 aaKnown RBP16.64■□□□□ 0.25
PNKP-218ENST00000625299 SAMM50Q9Y512 469 aa16.64■□□□□ 0.25
PNKP-218ENST00000625299 MAFBQ9Y5Q3 323 aaPredicted RBP16.64■□□□□ 0.25
PNKP-218ENST00000625299 V9GY48 417 aaPredicted RBP16.64■□□□□ 0.25
PNKP-218ENST00000625299 SPDYE4A6NLX3 237 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 MAGEB2O15479 319 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 ZC3H11AO75152 810 aaKnown RBP eCLIP16.63■□□□□ 0.25
PNKP-218ENST00000625299 PSAPP07602 524 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 EPCAMP16422 314 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 EIF4BP23588 611 aaKnown RBP16.63■□□□□ 0.25
PNKP-218ENST00000625299 TMOD1P28289 359 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 CLK2P49760 499 aaKnown RBP16.63■□□□□ 0.25
PNKP-218ENST00000625299 BCAR1P56945 870 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 ATAT1Q5SQI0 421 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 CREB3L3Q68CJ9 461 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 KIAA1841Q6NSI8 718 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 VPS52Q8N1B4 723 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 MRPL9Q9BYD2 267 aaKnown RBP16.63■□□□□ 0.25
PNKP-218ENST00000625299 LSG1Q9H089 658 aaKnown RBP16.63■□□□□ 0.25
PNKP-218ENST00000625299 ADAMTS10Q9H324 1103 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 DZANK1Q9NVP4 752 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 BARHL2Q9NY43 387 aa16.63■□□□□ 0.25
PNKP-218ENST00000625299 WDR81Q562E7 1941 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 IGLV3-22A0A075B6J6 115 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 LONRF3Q496Y0 759 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 ZNF746Q6NUN9 644 aaPredicted RBP16.62■□□□□ 0.25
PNKP-218ENST00000625299 APOA5Q6Q788 366 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 TMC5Q6UXY8 1006 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 SGMS1Q86VZ5 419 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 SMAP1Q8IYB5 467 aaPredicted RBP16.62■□□□□ 0.25
PNKP-218ENST00000625299 ZDHHC14Q8IZN3 488 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 ADSSL1Q8N142 457 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 NLRP7Q8WX94 980 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 GLT8D2Q9H1C3 349 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 TBC1D22BQ9NU19 505 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 PCDHA10Q9Y5I2 948 aa16.62■□□□□ 0.25
PNKP-218ENST00000625299 hCG_1984214I3L0E3 225 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 ZBTB43O43298 467 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 CSDE1O75534 798 aaKnown RBP16.61■□□□□ 0.25
PNKP-218ENST00000625299 EOMESO95936 686 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 GPC3P51654 580 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 SETQ01105 290 aaPredicted RBP16.61■□□□□ 0.25
PNKP-218ENST00000625299 CWF19L1Q69YN2 538 aaKnown RBP16.61■□□□□ 0.25
PNKP-218ENST00000625299 CABP7Q86V35 215 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 TMEM173Q86WV6 379 aaPredicted RBP16.61■□□□□ 0.25
PNKP-218ENST00000625299 TEX2Q8IWB9 1127 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 PLCD3Q8N3E9 789 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 ZNF713Q8N859 430 aaPredicted RBP16.61■□□□□ 0.25
PNKP-218ENST00000625299 FEZF2Q8TBJ5 459 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 FAM167AQ96KS9 214 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 TCEANC2Q96MN5 208 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 ZBP1Q9H171 429 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 NAP1L2Q9ULW6 460 aaPredicted RBP16.61■□□□□ 0.25
PNKP-218ENST00000625299 DENND4AQ7Z401 1863 aa16.61■□□□□ 0.25
PNKP-218ENST00000625299 A0A0U1RQF3 1178 aa16.6■□□□□ 0.25
PNKP-218ENST00000625299 GOLGA8AA7E2F4 631 aa16.6■□□□□ 0.25
PNKP-218ENST00000625299 GOLGA8BA8MQT2 603 aa16.6■□□□□ 0.25
PNKP-218ENST00000625299 OATP04181 439 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms