RNA–Protein interactions for RNA: ENST00000623461.3

VCL-206, Transcript of vinculin, humanhuman

TSL 1 (best)

Gene VCL, Length 7,995 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-206ENST00000623461 ORC4O43929 436 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 IL1RL1Q01638 556 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CHP1Q99653 195 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 USP42Q9H9J4 1324 aaKnown RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 ZCCHC11Q5TAX3 1644 aaKnown RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 DLATP10515 647 aaKnown RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 MSL3Q8N5Y2 521 aaKnown RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 ATP11CQ8NB49 1132 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CCDC127Q96BQ5 260 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CMTM5Q96DZ9 223 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 ESYT2A0FGR8 921 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 FAM170AA1A519 330 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CFBP00751 764 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 NAF1Q96HR8 494 aaKnown RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 ZNF496Q96IT1 587 aaPredicted RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 DNAJC12Q9UKB3 198 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 STRNO43815 780 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 PHF2O75151 1096 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 ZRANB2O95218 330 aaKnown RBP eCLIP9.51□□□□□ -0.891e-6■■■■■ 30
VCL-206ENST00000623461 KRT8P05787 483 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CEP55Q53EZ4 464 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 MAPKAPK5Q8IW41 473 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 KCTD6Q8NC69 237 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 CARD9Q9H257 536 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 TMBIM4Q9HC24 238 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 RBM12Q9NTZ6 932 aaKnown RBP9.51□□□□□ -0.89
VCL-206ENST00000623461 GID8Q9NWU2 228 aa9.51□□□□□ -0.89
VCL-206ENST00000623461 MED7O43513 233 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 PDE8BO95263 885 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 A1BGP04217 495 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 CCDC159P0C7I6 412 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 ITIH2P19823 946 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 TMOD1P28289 359 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 DSG1Q02413 1049 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 PABPC4Q13310 644 aaKnown RBP eCLIP9.5□□□□□ -0.892e-10■■□□□ 13.9
VCL-206ENST00000623461 TBCCQ15814 346 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 GUF1Q8N442 669 aaKnown RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 ERP27Q96DN0 273 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 GCOM2Q9BZD3 368 aaPredicted RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 NEO1Q92859 1461 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 AK9Q5TCS8 1911 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 FAM47DPA6NHR8 397 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 SAT1P21673 171 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 SP4Q02446 784 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 MAPRE2Q15555 327 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 DTX3LQ8TDB6 740 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 CAVIN3Q969G5 261 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 SUGCTQ9HAC7 445 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 CACYBPQ9HB71 228 aaKnown RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 SEPT10Q9P0V9 454 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 CLEC11AQ9Y240 323 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 HECW2Q9P2P5 1572 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 CLIC2O15247 247 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 RABGAP1LQ5R372 815 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 POMGNT1Q8WZA1 660 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 RBM17Q96I25 401 aaKnown RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 KCNK16Q96T55 309 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 PUS7LQ9H0K6 701 aaKnown RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 TRABDQ9H4I3 376 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 TRPC1P48995 793 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 FXR1P51114 621 aaKnown RBP eCLIP9.5□□□□□ -0.892e-6■■■□□ 15.2
VCL-206ENST00000623461 NCAPHQ15003 741 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 SLC18A3Q16572 532 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 PIGOQ8TEQ8 1089 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 KLC2Q9H0B6 622 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 STX18Q9P2W9 335 aaKnown RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 FBXO2Q9UK22 296 aaPredicted RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 STRIP2Q9ULQ0 834 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 MXI1P50539 228 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 MAP3K7CLP57077 242 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 MRPS15P82914 257 aaKnown RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 PREPLQ4J6C6 727 aaPredicted RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 NLRX1Q86UT6 975 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 RASGRP4Q8TDF6 673 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 RAPGEF5Q92565 580 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 MIEF2Q96C03 454 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 NSL1Q96IY1 281 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 NACC1Q96RE7 527 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 DCLRE1BQ9H816 532 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 PKD2L2Q9NZM6 624 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 ZNF229Q9UJW7 825 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 NCKAP5LQ9HCH0 1330 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 RNF103-CHMP3A0A140T963 221 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 PDE5AO76074 875 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 ZCWPW2Q504Y3 356 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 FBXO11Q86XK2 927 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 SPDYE1Q8NFV5 336 aaPredicted RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 SMYD2Q9NRG4 433 aa9.5□□□□□ -0.89
VCL-206ENST00000623461 MRPL11Q9Y3B7 192 aaKnown RBP9.5□□□□□ -0.89
VCL-206ENST00000623461 POLR2MP0CAP2 368 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 CDC25AP30304 524 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 CARSP49589 748 aaKnown RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 PTPN12Q05209 780 aaKnown RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 FMR1Q06787 632 aaKnown RBP eCLIP9.49□□□□□ -0.895e-8■■■□□ 18.8
VCL-206ENST00000623461 KCNH2Q12809 1159 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 GPATCH4Q5T3I0 446 aaKnown RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 MB21D2Q8IYB1 491 aaPredicted RBP9.49□□□□□ -0.89
VCL-206ENST00000623461 CHURC1Q8WUH1 139 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 PARVGQ9HBI0 331 aa9.49□□□□□ -0.89
VCL-206ENST00000623461 MYBL1P10243 752 aa9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms