RNA–Protein interactions for RNA: ENST00000621325.1

LIME1-210, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 2,410 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-210ENST00000621325 SORBS3O60504 671 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 TRIM49P0CI25 452 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 TRIM49CP0CI26 452 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 KLHL30Q0D2K2 578 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 TERF2Q15554 542 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 NLRX1Q86UT6 975 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 RBM46Q8TBY0 533 aaKnown RBP23.27■■□□□ 1.32
LIME1-210ENST00000621325 DRC1Q96MC2 740 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 ACAD9Q9H845 621 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 SAR1BQ9Y6B6 198 aa23.27■■□□□ 1.32
LIME1-210ENST00000621325 A0A087X0T9 212 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 ADM5C9JUS6 153 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 ATP2A1O14983 1001 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 FAM228BP0C875 321 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 PLS3P13797 630 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 XKR9Q5GH70 373 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 TREML2Q5T2D2 321 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 GPRASP2Q96D09 838 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 ADAMTS1Q9UHI8 967 aa23.27■■□□□ 1.31
LIME1-210ENST00000621325 CTAGE15A4D2H0 777 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 SEC31AO94979 1220 aaKnown RBP23.26■■□□□ 1.31
LIME1-210ENST00000621325 CTAGE8P0CG41 777 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 KCNA2P16389 499 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 SP4Q02446 784 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 XRRA1Q6P2D8 792 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 ANO5Q75V66 913 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 IRF2BP2Q7Z5L9 587 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 CTAGE6Q86UF2 777 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 CTAGE4Q8IX94 777 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 NOA1Q8NC60 698 aaKnown RBP23.26■■□□□ 1.31
LIME1-210ENST00000621325 SPAG5Q96R06 1193 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 MKNK1Q9BUB5 465 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP23.26■■□□□ 1.31
LIME1-210ENST00000621325 MOV10L1Q9BXT6 1211 aaKnown RBP23.26■■□□□ 1.31
LIME1-210ENST00000621325 PCIF1Q9H4Z3 704 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 HOXC10Q9NYD6 342 aa23.26■■□□□ 1.31
LIME1-210ENST00000621325 SFNP31947 248 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 CAPZA3Q96KX2 299 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 ANKZF1Q9H8Y5 726 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 FRMD4BQ9Y2L6 1034 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 ZNF185O15231 689 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 PJA2O43164 708 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 EXOC3O60645 756 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 PNMA6AP0CW24 399 aaPredicted RBP23.25■■□□□ 1.31
LIME1-210ENST00000621325 CBWD6Q4V339 395 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 CBWD3Q5JTY5 395 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 CBWD5Q5RIA9 395 aa23.25■■□□□ 1.31
LIME1-210ENST00000621325 UPF1Q92900 1129 aaKnown RBP eCLIP23.25■■□□□ 1.311e-14■□□□□ 10.4
LIME1-210ENST00000621325 DICER1Q9UPY3 1922 aaKnown RBP23.25■■□□□ 1.31
LIME1-210ENST00000621325 SLC16A4O15374 487 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 PPP1R12BO60237 982 aaPredicted RBP23.24■■□□□ 1.31
LIME1-210ENST00000621325 PEX3P56589 373 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 PTK2Q05397 1052 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 MMS19Q96T76 1030 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 ARGLU1Q9NWB6 273 aaPredicted RBP23.24■■□□□ 1.31
LIME1-210ENST00000621325 PCDHA10Q9Y5I2 948 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 ZNF862O60290 1169 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 FMO5P49326 533 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 FSTL1Q12841 308 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 SLC18A3Q16572 532 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 FAM102BQ5T8I3 360 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 ZNF746Q6NUN9 644 aaPredicted RBP23.24■■□□□ 1.31
LIME1-210ENST00000621325 HAUS6Q7Z4H7 955 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 ZSWIM2Q8NEG5 633 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 TRIM58Q8NG06 486 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 CBWD1Q9BRT8 395 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 FHDC1Q9C0D6 1143 aaPredicted RBP23.24■■□□□ 1.31
LIME1-210ENST00000621325 GABBR1Q9UBS5 961 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 KIAA1217Q5T5P2 1943 aa23.24■■□□□ 1.31
LIME1-210ENST00000621325 BUB1O43683 1085 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 TACC1O75410 805 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 SOX10P56693 466 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 SH3D19Q5HYK7 790 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 IQCEQ6IPM2 695 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 ZNF571Q7Z3V5 609 aaPredicted RBP23.23■■□□□ 1.31
LIME1-210ENST00000621325 PACSIN1Q9BY11 444 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 MYH10P35580 1976 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 ANO9A1A5B4 782 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 GTPBP10A4D1E9 387 aaKnown RBP23.23■■□□□ 1.31
LIME1-210ENST00000621325 RHOXF2BP0C7M4 288 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 TMCO3Q6UWJ1 677 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 GOLGA5Q8TBA6 731 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 PNKPQ96T60 521 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 RHOXF2Q9BQY4 288 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 KIFC3Q9BVG8 833 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 SBF1O95248 1867 aa23.23■■□□□ 1.31
LIME1-210ENST00000621325 SLC9A9Q8IVB4 645 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 DOCK5Q9H7D0 1870 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 ZRANB2O95218 330 aaKnown RBP eCLIP23.22■■□□□ 1.312e-8■■■■■ 38.5
LIME1-210ENST00000621325 MAPTP10636 758 aaKnown RBP23.22■■□□□ 1.31
LIME1-210ENST00000621325 JAM2P57087 298 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 DLG4P78352 724 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 CNTN2Q02246 1040 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 SWSAP1Q6NVH7 229 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 DNAAF5Q86Y56 855 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 ACCSQ96QU6 501 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 SENP7Q9BQF6 1050 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 ANKEF1Q9NU02 776 aa23.22■■□□□ 1.31
LIME1-210ENST00000621325 PDE2AO00408 941 aaPredicted RBP23.21■■□□□ 1.31
LIME1-210ENST00000621325 MAFGO15525 162 aa23.21■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms