RNA–Protein interactions for RNA: ENST00000621016.4

CDH1-214, Transcript of cadherin 1, humanhuman

TSL 5 BASIC

Gene CDH1, Length 3,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-214ENST00000621016 TDRD3Q9H7E2 651 aaKnown RBP11.61□□□□□ -0.55
CDH1-214ENST00000621016 DNM1LO00429 736 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 LRRN2O75325 713 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 TUBBP07437 444 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 LINGO3P0C6S8 592 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 NMT1P30419 496 aaKnown RBP11.61□□□□□ -0.55
CDH1-214ENST00000621016 ODF2Q5BJF6 829 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 ARSHQ5FYA8 562 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 CFAP58Q5T655 872 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 PALB2Q86YC2 1186 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 MYCT1Q8N699 235 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 OCEL1Q9H607 264 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 ATP6V0A2Q9Y487 856 aa11.61□□□□□ -0.55
CDH1-214ENST00000621016 A0A1W2PQJ5 194 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 CLRN2A0PK11 232 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 SMIM23A6NLE4 172 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 TMEM110-MUSTN1A8MSY1 372 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 FAM86B1E9PN63 330 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 F5H6K3 240 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 HGSO14964 777 aaPredicted RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 TBCAO75347 108 aaKnown RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 SERPING1P05155 500 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 FAM86B2P0C5J1 330 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 XRCC5P13010 732 aaKnown RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 MXRA7P84157 204 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 KLRC3Q07444 240 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 EXOC3L4Q17RC7 722 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 SEPT12Q8IYM1 358 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 RPGRIP1Q96KN7 1286 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 DPH5Q9H2P9 285 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 NOD2Q9HC29 1040 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 A0A1B0GUL6 1792 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 GH2P01242 217 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 COG2Q14746 738 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 UHMK1Q8TAS1 419 aaKnown RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 RBM41Q96IZ5 413 aaKnown RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 ZIM3Q96PE6 472 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 SPDYE5A6NIY4 337 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 AKAP3O75969 853 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 PPP1R2P41236 205 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 NNTQ13423 1086 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 RPS6KA1Q15418 735 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 VPS72Q15906 364 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 RUSC1Q9BVN2 902 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 NT5C3AQ9H0P0 336 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 DHX36Q9H2U1 1008 aaKnown RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 LUC7LQ9NQ29 371 aaKnown RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 CEP72Q9P209 647 aa11.6□□□□□ -0.55
CDH1-214ENST00000621016 BZW2Q9Y6E2 419 aaKnown RBP11.6□□□□□ -0.55
CDH1-214ENST00000621016 COL14A1Q05707 1796 aaKnown RBP11.59□□□□□ -0.55
CDH1-214ENST00000621016 STRCQ7RTU9 1775 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 TCP10L2B9ZVM9 353 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 TRIM49P0CI25 452 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 TRIM49CP0CI26 452 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 CRKP46108 304 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 ALKBH5Q6P6C2 394 aaKnown RBP11.59□□□□□ -0.55
CDH1-214ENST00000621016 ZNF571Q7Z3V5 609 aaPredicted RBP11.59□□□□□ -0.55
CDH1-214ENST00000621016 DAAM2Q86T65 1068 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 LRRC27Q9C0I9 530 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 RAD51CO43502 376 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 SMNDC1O75940 238 aaKnown RBP eCLIP11.59□□□□□ -0.55
CDH1-214ENST00000621016 TMEM119Q4V9L6 283 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 GPATCH4Q5T3I0 446 aaKnown RBP11.59□□□□□ -0.55
CDH1-214ENST00000621016 APOBEC3HQ6NTF7 200 aaKnown RBP11.59□□□□□ -0.55
CDH1-214ENST00000621016 ARHGAP27Q6ZUM4 889 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 PURBQ96QR8 312 aaKnown RBP11.59□□□□□ -0.55
CDH1-214ENST00000621016 PCIF1Q9H4Z3 704 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 DNAJC18Q9H819 358 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 GCNT4Q9P109 453 aa11.59□□□□□ -0.55
CDH1-214ENST00000621016 ROBO3Q96MS0 1386 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 TARSL2A2RTX5 802 aaKnown RBP11.58□□□□□ -0.55
CDH1-214ENST00000621016 IMPDH2P12268 514 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 UCHL3P15374 230 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 SLC8A3P57103 927 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 ZNF211Q13398 564 aaPredicted RBP11.58□□□□□ -0.55
CDH1-214ENST00000621016 SLC18A3Q16572 532 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 FIGNQ5HY92 759 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 TBC1D1Q86TI0 1168 aaPredicted RBP11.58□□□□□ -0.55
CDH1-214ENST00000621016 IFT20Q8IY31 132 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 AENQ8WTP8 325 aaKnown RBP11.58□□□□□ -0.55
CDH1-214ENST00000621016 ZNF473Q8WTR7 871 aaKnown RBP11.58□□□□□ -0.55
CDH1-214ENST00000621016 ZNF570Q96NI8 536 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 CELF4Q9BZC1 486 aaKnown RBP11.58□□□□□ -0.55
CDH1-214ENST00000621016 AMACRQ9UHK6 382 aa11.58□□□□□ -0.55
CDH1-214ENST00000621016 ARAP2Q8WZ64 1704 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 ESYT2A0FGR8 921 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 EML1O00423 815 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 ITGA4P13612 1032 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 ECE1P42892 770 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 GABPAQ06546 454 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 PPP4R3AQ6IN85 833 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 TSHZ1Q6ZSZ6 1077 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 MIGA2Q7L4E1 593 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 FBXO11Q86XK2 927 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 GLYCTKQ8IVS8 523 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 TRIM59Q8IWR1 403 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 UBLCP1Q8WVY7 318 aaPredicted RBP11.58□□□□□ -0.56
CDH1-214ENST00000621016 OSBPL1AQ9BXW6 950 aa11.58□□□□□ -0.56
CDH1-214ENST00000621016 AJAP1Q9UKB5 411 aaPredicted RBP11.58□□□□□ -0.56
CDH1-214ENST00000621016 GRID2IPA4D2P6 1211 aa11.58□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms