RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 LBX2Q6XYB7 198 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 COL4A5P29400 1685 aa17.17■□□□□ 0.34
CPSF1-213ENST00000620219 LRRC53A6NM62 1247 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 TMEM110-MUSTN1A8MSY1 372 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 NKRFO15226 690 aaKnown RBP eCLIP17.16■□□□□ 0.34
CPSF1-213ENST00000620219 ABCB4P21439 1286 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 COPS5Q92905 334 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 PANX2Q96RD6 677 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 FAM213AQ9BRX8 229 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 TRIM10Q9UDY6 481 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 SMCHD1A6NHR9 2005 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 BUB1O43683 1085 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 TAF3Q5VWG9 929 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 ZNF746Q6NUN9 644 aaPredicted RBP17.16■□□□□ 0.34
CPSF1-213ENST00000620219 CEP63Q96MT8 703 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 PARK7Q99497 189 aaKnown RBP17.16■□□□□ 0.34
CPSF1-213ENST00000620219 SEL1LQ9UBV2 794 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 FAM184BQ9ULE4 1060 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 PDXKO00764 312 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 EIF4A3P38919 411 aaKnown RBP17.16■□□□□ 0.34
CPSF1-213ENST00000620219 ZNF112Q9UJU3 913 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 ODF2LQ9ULJ1 636 aa17.16■□□□□ 0.34
CPSF1-213ENST00000620219 TACC1O75410 805 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 GFPT2O94808 682 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 MAP2K1Q02750 393 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 WDR44Q5JSH3 913 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 CDR2LQ86X02 465 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 CCDC60Q8IWA6 550 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 XXYLT1Q8NBI6 393 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 TISP43B9A030 160 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 TNPO2O14787 897 aaKnown RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 TNFAIP3P21580 790 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 XRRA1Q6P2D8 792 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 SMAP1Q8IYB5 467 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 THNSL1Q8IYQ7 743 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 SLC35F6Q8N357 371 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 PORCNQ9H237 461 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 NHEJ1Q9H9Q4 299 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 ASB14A6NK59 587 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 DYNC1LI2O43237 492 aaPredicted RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 CCDC172P0C7W6 258 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 STAT1P42224 750 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 PPP2R5AQ15172 486 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 ADGRG1Q9Y653 693 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 RIOX2Q8IUF8 465 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 U2AF1L4Q8WU68 220 aaKnown RBP17.15■□□□□ 0.34
CPSF1-213ENST00000620219 ADAMTS1Q9UHI8 967 aa17.15■□□□□ 0.34
CPSF1-213ENST00000620219 DGAT1O75907 488 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 NDUFA10O95299 355 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 PLS3P13797 630 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 KIFAP3Q92845 792 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 MAP7D2Q96T17 732 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 HINFPQ9BQA5 517 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 ARGLU1Q9NWB6 273 aaPredicted RBP17.14■□□□□ 0.33
CPSF1-213ENST00000620219 CCNE2O96020 404 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 ADORA2AP29274 412 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 MXI1P50539 228 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 RNF149Q8NC42 400 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 SLC9A1P19634 815 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 NCBP1Q09161 790 aaKnown RBP17.14■□□□□ 0.33
CPSF1-213ENST00000620219 EMC2Q15006 297 aa17.14■□□□□ 0.33
CPSF1-213ENST00000620219 NLRP7Q8WX94 980 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 APOL6Q9BWW8 343 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 TRIM6Q9C030 488 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-213ENST00000620219 UBE2TQ9NPD8 197 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-213ENST00000620219 PLEKP08567 350 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-213ENST00000620219 TMOD1P28289 359 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 TRPC3Q13507 836 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 EPC1Q9H2F5 836 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 CYP26B1Q9NR63 512 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 NOD1Q9Y239 953 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 MORC2Q9Y6X9 1032 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-213ENST00000620219 SUPT20HL2P0C7V6 817 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 CBWD1Q9BRT8 395 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 TXNRD2Q9NNW7 524 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 WRAP73Q9P2S5 460 aaPredicted RBP17.13■□□□□ 0.33
CPSF1-213ENST00000620219 TNS1Q9HBL0 1735 aaKnown RBP17.13■□□□□ 0.33
CPSF1-213ENST00000620219 AKAP3O75969 853 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 ACOT2P49753 483 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 CBX1P83916 185 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 SEZ6Q53EL9 994 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 NYAP1Q6ZVC0 841 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 RETREG2Q8NC44 543 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 SCFD2Q8WU76 684 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 TRAPPC12Q8WVT3 735 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 PSPC1Q8WXF1 523 aaKnown RBP17.13■□□□□ 0.33
CPSF1-213ENST00000620219 MROH8Q9H579 483 aa17.13■□□□□ 0.33
CPSF1-213ENST00000620219 CSDE1O75534 798 aaKnown RBP17.12■□□□□ 0.33
CPSF1-213ENST00000620219 UBA1P22314 1058 aaKnown RBP17.12■□□□□ 0.33
CPSF1-213ENST00000620219 TMEM62Q0P6H9 643 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 TBX2Q13207 712 aaPredicted RBP17.12■□□□□ 0.33
CPSF1-213ENST00000620219 C1orf186Q6ZWK4 172 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 ZNF720Q7Z2F6 126 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 DNERQ8NFT8 737 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 MSTO1Q9BUK6 570 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 BTBD19C9JJ37 291 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 RHOXF2BP0C7M4 288 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 BCRP11274 1271 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 MAP3K10Q02779 954 aa17.12■□□□□ 0.33
CPSF1-213ENST00000620219 FSTL1Q12841 308 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms