RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 NEK9Q8TD19 979 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 OXER1Q8TDS5 423 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 PPP2R3CQ969Q6 453 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 SCLT1Q96NL6 688 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 CEP89Q96ST8 783 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 VAV3Q9UKW4 847 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 PCDHB12Q9Y5F1 795 aa21.41■■□□□ 1.02
CCDC28A-203ENST00000617445 CSPP1Q1MSJ5 1256 aa21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 NSUN7Q8NE18 718 aaKnown RBP21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 NLRP7Q8WX94 980 aa21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 NECAB3Q96P71 396 aaPredicted RBP21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 GCOM2Q9BZD3 368 aaPredicted RBP21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 INO80BQ9C086 356 aaPredicted RBP21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 GJB4Q9NTQ9 266 aa21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 FAM50BQ9Y247 325 aa21.4■■□□□ 1.02
CCDC28A-203ENST00000617445 KIAA1671Q9BY89 1806 aa21.39■■□□□ 1.02
CCDC28A-203ENST00000617445 EML1O00423 815 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 MAFO75444 373 aaPredicted RBP21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 UBE3AQ05086 875 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 TRIM29Q14134 588 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 EPHA7Q15375 998 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 ZNF410Q86VK4 478 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 SPPL3Q8TCT6 385 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 HAS1Q92839 578 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 ALG13Q9NP73 1137 aaKnown RBP21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 CHST12Q9NRB3 414 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 DACT1Q9NYF0 836 aa21.39■■□□□ 1.01
CCDC28A-203ENST00000617445 TBKBP1A7MCY6 615 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 ITGB1P05556 798 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 GATMP50440 423 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 SPOUT1Q5T280 376 aaKnown RBP21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 FAM102BQ5T8I3 360 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 ANO5Q75V66 913 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 C4orf19Q8IY42 314 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 KLHL23Q8NBE8 558 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 GADD45GIP1Q8TAE8 222 aaPredicted RBP21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 TNFRSF25Q93038 417 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 TMEM117Q9H0C3 514 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 CYP26B1Q9NR63 512 aa21.38■■□□□ 1.01
CCDC28A-203ENST00000617445 ATG2AQ2TAZ0 1938 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 LARGE1O95461 756 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 EOMESO95936 686 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 IBSPP21815 317 aaPredicted RBP21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 NR5A1Q13285 461 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 CTC1Q2NKJ3 1217 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 PTCRAQ6ISU1 281 aaPredicted RBP21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 OTUD6AQ7L8S5 288 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 SLC7A3Q8WY07 619 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 RSPH1Q8WYR4 309 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 SUCLA2Q9P2R7 463 aaPredicted RBP21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 LIMCH1Q9UPQ0 1083 aa21.37■■□□□ 1.01
CCDC28A-203ENST00000617445 A0A0U1RQF3 1178 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 GRXCR2A6NFK2 248 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 GAS2O43903 313 aaKnown RBP21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 SEC24BO95487 1268 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 SFPQP23246 707 aaKnown RBP eCLIP21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 DRP2Q13474 957 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 CAMK1Q14012 370 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 EARS2Q5JPH6 523 aaKnown RBP21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 ECHDC2Q86YB7 292 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 POTEDQ86YR6 584 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 POF1BQ8WVV4 589 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 TRAIPQ9BWF2 469 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 TYW1Q9NV66 732 aaKnown RBP21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 CLDND1Q9NY35 253 aa21.36■■□□□ 1.01
CCDC28A-203ENST00000617445 TMEM150BA6NC51 233 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 LAG3P18627 525 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 RFC5P40937 340 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 HYAL1Q12794 435 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 PDE12Q6L8Q7 609 aaKnown RBP21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 EP400NLQ6ZTU2 488 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 RHPN2Q8IUC4 686 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 DIS3L2Q8IYB7 885 aaKnown RBP21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 ABI1Q8IZP0 508 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 ZSWIM4Q9H7M6 989 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 PCDHA12Q9UN75 941 aa21.35■■□□□ 1.01
CCDC28A-203ENST00000617445 A0A087WZ62 844 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 FSD2A1L4K1 749 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 BTBD18B2RXH4 712 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 FGFR1P11362 822 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 SKIP12755 728 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 SPIRE1Q08AE8 756 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 SAFBQ15424 915 aaKnown RBP eCLIP21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 FAM178BQ8IXR5 827 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 COLGALT1Q8NBJ5 622 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 ZNF668Q96K58 619 aaPredicted RBP21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 CEP170P1Q96L14 293 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 CASD1Q96PB1 797 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 FDXACB1Q9BRP7 624 aaPredicted RBP21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 LLPHQ9BRT6 129 aaKnown RBP21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 LXNQ9BS40 222 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 C1QTNF1Q9BXJ1 281 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 DHX33Q9H6R0 707 aaKnown RBP21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 LZTS1Q9Y250 596 aa21.34■■□□□ 1.01
CCDC28A-203ENST00000617445 H3BQ06 376 aaPredicted RBP21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 ASAP2O43150 1006 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 JAK2O60674 1132 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 DTNBO60941 627 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 DNAJB1P25685 340 aa21.33■■□□□ 1.01
CCDC28A-203ENST00000617445 YWHABP31946 246 aaKnown RBP21.33■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms