RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-216	ENST00000601816	LMAN2L	Q9H0V9	348 aa		29.21	■■■□□ 2.27
PNKP-216	ENST00000601816	SPTBN5	Q9NRC6	3674 aa	Known RBP	29.21	■■■□□ 2.27
PNKP-216	ENST00000601816	TTC28	Q96AY4	2481 aa		29.2	■■■□□ 2.27
PNKP-216	ENST00000601816	GRM6	O15303	877 aa		29.2	■■■□□ 2.26
PNKP-216	ENST00000601816	CDC42EP1	Q00587	391 aa		29.2	■■■□□ 2.26
PNKP-216	ENST00000601816	LLPH	Q9BRT6	129 aa	Known RBP	29.2	■■■□□ 2.26
PNKP-216	ENST00000601816	NSUN3	Q9H649	340 aa	Known RBP	29.2	■■■□□ 2.26
PNKP-216	ENST00000601816	UBE2Z	Q9H832	354 aa	Predicted RBP	29.2	■■■□□ 2.26
PNKP-216	ENST00000601816	ATP6V0A4	Q9HBG4	840 aa		29.2	■■■□□ 2.26
PNKP-216	ENST00000601816	MAF	O75444	373 aa	Predicted RBP	29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	ZSCAN20	P17040	1043 aa	Predicted RBP	29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	FAM189B	P81408	668 aa		29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	SAFB	Q15424	915 aa	Known RBP eCLIP	29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	CALCRL	Q16602	461 aa		29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	ZSCAN31	Q96LW9	406 aa	Predicted RBP	29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	KIF2C	Q99661	725 aa		29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	LXN	Q9BS40	222 aa		29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	GCOM2	Q9BZD3	368 aa	Predicted RBP	29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	CYP26B1	Q9NR63	512 aa		29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	TMEM161A	Q9NX61	479 aa		29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	SUCLA2	Q9P2R7	463 aa	Predicted RBP	29.19	■■■□□ 2.26
PNKP-216	ENST00000601816	TNFRSF10A	O00220	468 aa		29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	GUCY1B3	Q02153	619 aa		29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	SPIRE1	Q08AE8	756 aa		29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	TCEAL5	Q5H9L2	206 aa		29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	P2RX5	Q93086	422 aa		29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	ELAC1	Q9H777	363 aa	Known RBP	29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	WRAP73	Q9P2S5	460 aa	Predicted RBP	29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	XIRP2	A4UGR9	3374 aa		29.18	■■■□□ 2.26
PNKP-216	ENST00000601816	TBKBP1	A7MCY6	615 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	NEMF	O60524	1076 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	NPEPPS	P55786	919 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	NAALADL2	Q58DX5	795 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	FAM102B	Q5T8I3	360 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	C4orf19	Q8IY42	314 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	SLC7A3	Q8WY07	619 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	DYDC2	Q96IM9	177 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	C8orf76	Q96K31	380 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	CEP170P1	Q96L14	293 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	SH2B1	Q9NRF2	756 aa	Predicted RBP	29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	RGL1	Q9NZL6	768 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	PPME1	Q9Y570	386 aa		29.17	■■■□□ 2.26
PNKP-216	ENST00000601816	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	29.16	■■■□□ 2.26
PNKP-216	ENST00000601816	FGFR4	P22455	802 aa		29.16	■■■□□ 2.26
PNKP-216	ENST00000601816	ZNF410	Q86VK4	478 aa		29.16	■■■□□ 2.26
PNKP-216	ENST00000601816	RHPN2	Q8IUC4	686 aa		29.16	■■■□□ 2.26
PNKP-216	ENST00000601816	ZSWIM4	Q9H7M6	989 aa		29.16	■■■□□ 2.26
PNKP-216	ENST00000601816	ALG13	Q9NP73	1137 aa	Known RBP	29.16	■■■□□ 2.26
PNKP-216	ENST00000601816	PCDHA12	Q9UN75	941 aa		29.16	■■■□□ 2.26
PNKP-216	ENST00000601816	PLAGL2	Q9UPG8	496 aa		29.16	■■■□□ 2.26
PNKP-216	ENST00000601816		A0A087WZ62	844 aa		29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	FGFR1	P11362	822 aa		29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	KCNA5	P22460	613 aa		29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	YWHAB	P31946	246 aa	Known RBP	29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	POLG	P54098	1239 aa	Predicted RBP	29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	HMGN5	P82970	282 aa	Known RBP	29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	CYP4A11	Q02928	519 aa		29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	SPOUT1	Q5T280	376 aa	Known RBP	29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	OTUD6A	Q7L8S5	288 aa		29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	EXOC8	Q8IYI6	725 aa		29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	FDXACB1	Q9BRP7	624 aa	Predicted RBP	29.15	■■■□□ 2.26
PNKP-216	ENST00000601816	WNT7A	O00755	349 aa		29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	HOXA2	O43364	376 aa		29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	CSDE1	O75534	798 aa	Known RBP	29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	RFC5	P40937	340 aa		29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	RBM25	P49756	843 aa	Known RBP	29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	CTTN	Q14247	550 aa	Known RBP	29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	ZNF579	Q8NAF0	562 aa	Known RBP	29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	KLHL23	Q8NBE8	558 aa		29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	NLRP4	Q96MN2	994 aa		29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	NECAB3	Q96P71	396 aa	Predicted RBP	29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	TTC12	Q9H892	705 aa	Predicted RBP	29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	KIAA1671	Q9BY89	1806 aa		29.14	■■■□□ 2.26
PNKP-216	ENST00000601816	CSPG5	O95196	566 aa		29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	ITGB1	P05556	798 aa		29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	SFPQ	P23246	707 aa	Known RBP eCLIP	29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	ECHDC2	Q86YB7	292 aa		29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	TPH2	Q8IWU9	490 aa		29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	FAM184A	Q8NB25	1140 aa		29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	EIF2AK1	Q9BQI3	630 aa	Known RBP	29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	INO80B	Q9C086	356 aa	Predicted RBP	29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	DHX33	Q9H6R0	707 aa	Known RBP	29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	AAAS	Q9NRG9	546 aa		29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	DACT1	Q9NYF0	836 aa		29.13	■■■□□ 2.25
PNKP-216	ENST00000601816	TCF20	Q9UGU0	1960 aa	Known RBP	29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	TXK	P42681	527 aa		29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	LEXM	Q3ZCV2	418 aa		29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	XKR9	Q5GH70	373 aa		29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	KSR1	Q8IVT5	923 aa		29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	NEK9	Q8TD19	979 aa		29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	PABPC5	Q96DU9	382 aa	Known RBP	29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	TMEM117	Q9H0C3	514 aa		29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	PCDHB12	Q9Y5F1	795 aa		29.12	■■■□□ 2.25
PNKP-216	ENST00000601816	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	29.11	■■■□□ 2.25
PNKP-216	ENST00000601816	ATP2B1	P20020	1258 aa		29.11	■■■□□ 2.25
PNKP-216	ENST00000601816	ABI1	Q8IZP0	508 aa		29.11	■■■□□ 2.25
PNKP-216	ENST00000601816	RNF169	Q8NCN4	708 aa		29.11	■■■□□ 2.25
PNKP-216	ENST00000601816	SPPL3	Q8TCT6	385 aa		29.11	■■■□□ 2.25
PNKP-216	ENST00000601816	PSPC1	Q8WXF1	523 aa	Known RBP	29.11	■■■□□ 2.25
PNKP-216	ENST00000601816	MTMR9	Q96QG7	549 aa		29.11	■■■□□ 2.25

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms