RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 TMX1Q9H3N1 280 aa15.46■□□□□ 0.07
UPF1-205ENST00000598209 ST3GAL5Q9UNP4 418 aa15.46■□□□□ 0.07
UPF1-205ENST00000598209 NLRC5Q86WI3 1866 aa15.46■□□□□ 0.06
UPF1-205ENST00000598209 GAS2O43903 313 aaKnown RBP15.45■□□□□ 0.06
UPF1-205ENST00000598209 HSP90AA1P07900 732 aaKnown RBP15.45■□□□□ 0.06
UPF1-205ENST00000598209 XRCC6P12956 609 aaKnown RBP eCLIP15.45■□□□□ 0.06
UPF1-205ENST00000598209 EIF4BP23588 611 aaKnown RBP15.45■□□□□ 0.06
UPF1-205ENST00000598209 CCT6AP40227 531 aaKnown RBP15.45■□□□□ 0.06
UPF1-205ENST00000598209 RARRES1P49788 294 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 CDC42EP1Q00587 391 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 RESTQ13127 1097 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 GRIN2CQ14957 1233 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 POTEGQ6S5H5 508 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 RTN4RL1Q86UN2 441 aaPredicted RBP15.45■□□□□ 0.06
UPF1-205ENST00000598209 TCP11Q8WWU5 503 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 TMEM143Q96AN5 459 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 NACC1Q96RE7 527 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 MTRQ99707 1265 aa15.45■□□□□ 0.06
UPF1-205ENST00000598209 TSPYL2Q9H2G4 693 aaPredicted RBP15.45■□□□□ 0.06
UPF1-205ENST00000598209 A0A087WZ62 844 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 LCHNA4D1U4 455 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 PP2D1A8MPX8 630 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 STX6O43752 255 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 MGEA5O60502 916 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 DGAT1O75907 488 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 ARHGEF15O94989 841 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 DARSP14868 501 aaKnown RBP15.44■□□□□ 0.06
UPF1-205ENST00000598209 MUTP22033 750 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 TAP1Q03518 808 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 ZNF410Q86VK4 478 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 KSR1Q8IVT5 923 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 SNX29Q8TEQ0 813 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 PSPC1Q8WXF1 523 aaKnown RBP15.44■□□□□ 0.06
UPF1-205ENST00000598209 NLRP4Q96MN2 994 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 CDX2Q99626 313 aaPredicted RBP15.44■□□□□ 0.06
UPF1-205ENST00000598209 FDXACB1Q9BRP7 624 aaPredicted RBP15.44■□□□□ 0.06
UPF1-205ENST00000598209 GCOM2Q9BZD3 368 aaPredicted RBP15.44■□□□□ 0.06
UPF1-205ENST00000598209 ATP6V0A4Q9HBG4 840 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 XPNPEP1Q9NQW7 623 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 DBR1Q9UK59 544 aaKnown RBP15.44■□□□□ 0.06
UPF1-205ENST00000598209 MTMR6Q9Y217 621 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 INSL6Q9Y581 213 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 COL4A3BPQ9Y5P4 624 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 STK24Q9Y6E0 443 aa15.44■□□□□ 0.06
UPF1-205ENST00000598209 CSDE1O75534 798 aaKnown RBP15.43■□□□□ 0.06
UPF1-205ENST00000598209 BMP15O95972 392 aa15.43■□□□□ 0.06
UPF1-205ENST00000598209 HTRA4P83105 476 aaPredicted RBP15.43■□□□□ 0.06
UPF1-205ENST00000598209 ECM1Q16610 540 aa15.43■□□□□ 0.06
UPF1-205ENST00000598209 KRT79Q5XKE5 535 aa15.43■□□□□ 0.06
UPF1-205ENST00000598209 ARL6IP4Q66PJ3 421 aaKnown RBP15.43■□□□□ 0.06
UPF1-205ENST00000598209 FAM43BQ6ZT52 329 aaPredicted RBP15.43■□□□□ 0.06
UPF1-205ENST00000598209 PRPF31Q8WWY3 499 aaKnown RBP15.43■□□□□ 0.06
UPF1-205ENST00000598209 MYLIPQ8WY64 445 aa15.43■□□□□ 0.06
UPF1-205ENST00000598209 YME1L1Q96TA2 773 aa15.43■□□□□ 0.06
UPF1-205ENST00000598209 ADAM2Q99965 735 aa15.43■□□□□ 0.06
UPF1-205ENST00000598209 RALGAPA2Q2PPJ7 1873 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 FNDC1Q4ZHG4 1894 aaPredicted RBP15.42■□□□□ 0.06
UPF1-205ENST00000598209 DENND3A2RUS2 1198 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 VWA3AA6NCI4 1184 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 USO1O60763 962 aaKnown RBP15.42■□□□□ 0.06
UPF1-205ENST00000598209 FGFR4P22455 802 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 CDC25AP30304 524 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 LAMTOR4Q0VGL1 99 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 DSC3Q14574 896 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 SF3A1Q15459 793 aaKnown RBP15.42■□□□□ 0.06
UPF1-205ENST00000598209 PRDM12Q9H4Q4 367 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 CERS4Q9HA82 394 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 C1orf112Q9NSG2 853 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 DDX19AQ9NUU7 478 aaKnown RBP15.42■□□□□ 0.06
UPF1-205ENST00000598209 KIAA1024Q9UPX6 916 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 STXBP5LQ9Y2K9 1186 aa15.42■□□□□ 0.06
UPF1-205ENST00000598209 COL4A4P53420 1690 aaPredicted RBP15.41■□□□□ 0.06
UPF1-205ENST00000598209 COL4A6Q14031 1691 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 LINC01553A4QN01 128 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 ARHGEF35A5YM69 484 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 ASAP2O43150 1006 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 SRGAP2CP0DJJ0 459 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 IBSPP21815 317 aaPredicted RBP15.41■□□□□ 0.06
UPF1-205ENST00000598209 SARSP49591 514 aaKnown RBP15.41■□□□□ 0.06
UPF1-205ENST00000598209 FAM173BQ6P4H8 233 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 SPRED2Q7Z698 418 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 NPAS4Q8IUM7 802 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 SPRYD3Q8NCJ5 442 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 SP7Q8TDD2 431 aaPredicted RBP15.41■□□□□ 0.06
UPF1-205ENST00000598209 MMTAG2Q9BU76 263 aaKnown RBP15.41■□□□□ 0.06
UPF1-205ENST00000598209 INO80BQ9C086 356 aaPredicted RBP15.41■□□□□ 0.06
UPF1-205ENST00000598209 ZSCAN16Q9H4T2 348 aaPredicted RBP15.41■□□□□ 0.06
UPF1-205ENST00000598209 IFT122Q9HBG6 1241 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 RGS18Q9NS28 235 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 CLIC4Q9Y696 253 aa15.41■□□□□ 0.06
UPF1-205ENST00000598209 KIAA1671Q9BY89 1806 aa15.4■□□□□ 0.06
UPF1-205ENST00000598209 MYH11P35749 1972 aa15.4■□□□□ 0.06
UPF1-205ENST00000598209 C9IYK1 514 aa15.4■□□□□ 0.06
UPF1-205ENST00000598209 STAG3L1P0CL83 205 aa15.4■□□□□ 0.06
UPF1-205ENST00000598209 ZSCAN20P17040 1043 aaPredicted RBP15.4■□□□□ 0.06
UPF1-205ENST00000598209 SFPQP23246 707 aaKnown RBP eCLIP15.4■□□□□ 0.06
UPF1-205ENST00000598209 ARL2P36404 184 aa15.4■□□□□ 0.06
UPF1-205ENST00000598209 MXD4Q14582 209 aaPredicted RBP15.4■□□□□ 0.06
UPF1-205ENST00000598209 PADI6Q6TGC4 694 aa15.4■□□□□ 0.06
UPF1-205ENST00000598209 SLC24A5Q71RS6 500 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms