RNA–Protein interactions for RNA: ENST00000597928.5

USHBP1-207, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2

Gene USHBP1, Length 3,598 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-207ENST00000597928 CBWD5Q5RIA9 395 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 MICALCLQ6ZW33 695 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 CEP63Q96MT8 703 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 FMO2Q99518 471 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 INTS2Q9H0H0 1204 aaKnown RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 METTL14Q9HCE5 456 aaKnown RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 TYW1Q9NV66 732 aaKnown RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 LARSQ9P2J5 1176 aaKnown RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 DBR1Q9UK59 544 aaKnown RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 PNMA2Q9UL42 364 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 PPP1R9AQ9ULJ8 1098 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 GINS2Q9Y248 185 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 NR2E1Q9Y466 385 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 TARSL2A2RTX5 802 aaKnown RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 BCRP11274 1271 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 POLD1P28340 1107 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 HGSNATQ68CP4 663 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 PACS2Q86VP3 889 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 PALB2Q86YC2 1186 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 MMGT1Q8N4V1 131 aa13.43□□□□□ -0.26
USHBP1-207ENST00000597928 JPH2Q9BR39 696 aaPredicted RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 TAF1DQ9H5J8 278 aaPredicted RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 TOPORSQ9NS56 1045 aaPredicted RBP13.43□□□□□ -0.26
USHBP1-207ENST00000597928 A0A1W2PQJ5 194 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 MEIS2O14770 477 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 CLTAP09496 248 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 ATF7P17544 494 aaPredicted RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 HSD17B3P37058 310 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 SMAD1Q15797 465 aaKnown RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 CC2D2BQ6DHV5 1058 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 PPP4R3AQ6IN85 833 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 TADA2BQ86TJ2 420 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 CPNE8Q86YQ8 564 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 SP8Q8IXZ3 490 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 NLGN1Q8N2Q7 840 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 ZSWIM2Q8NEG5 633 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 RBM46Q8TBY0 533 aaKnown RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 DHX38Q92620 1227 aaKnown RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 ARHGEF26Q96DR7 871 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 WDR11Q9BZH6 1224 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 HNRNPDLO14979 420 aaKnown RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 RPSAP08865 295 aaKnown RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 IL1R1P14778 569 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 FERP16591 822 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 LSP1P33241 339 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 COL23A1Q86Y22 540 aaPredicted RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 FNBP1Q96RU3 617 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 EHMT1Q9H9B1 1298 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 TTC7AQ9ULT0 858 aaPredicted RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 SSU72P8A0A1W2PR75 194 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 CCDC172P0C7W6 258 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 NPR1P16066 1061 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 RNF10Q8N5U6 811 aaKnown RBP13.42□□□□□ -0.26
USHBP1-207ENST00000597928 TCP11Q8WWU5 503 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 C18orf8Q96DM3 657 aa13.42□□□□□ -0.26
USHBP1-207ENST00000597928 ZNF233A6NK53 670 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 DDX3XO00571 662 aaKnown RBP eCLIP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 EIF3HO15372 352 aaKnown RBP eCLIP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 CD58P19256 250 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 RPA1P27694 616 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 MAGEA9P43362 315 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 MARCKSL1P49006 195 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 FMO5P49326 533 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 MXI1P50539 228 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 JAG1P78504 1218 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 SEPT7Q16181 437 aaKnown RBP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 LLGL2Q6P1M3 1020 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 UBL4BQ8N7F7 174 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ATG4AQ8WYN0 398 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ACSF2Q96CM8 615 aaPredicted RBP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 P2RX7Q99572 595 aaKnown RBP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ELAC2Q9BQ52 826 aaKnown RBP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 AZI2Q9H6S1 392 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 RASAL2Q9UJF2 1139 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 DYNLT1P63172 113 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 TMEM119Q4V9L6 283 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 B4GALNT4Q76KP1 1039 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 LDHDQ86WU2 507 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ARFGAP2Q8N6H7 521 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 TPCN2Q8NHX9 752 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 AENQ8WTP8 325 aaKnown RBP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 NACC1Q96RE7 527 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 CCT8L2Q96SF2 557 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 DNAJC18Q9H819 358 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 DCDC2CA8MYV0 355 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ADCY8P40145 1251 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ERFP50548 548 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 USP11P51784 963 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ARHGEF16Q5VV41 709 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ALS2CLQ60I27 953 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 SYCE1Q8N0S2 351 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 CHURC1Q8WUH1 139 aa13.41□□□□□ -0.26
USHBP1-207ENST00000597928 NAP1L4Q99733 375 aaKnown RBP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 ZNF142P52746 1687 aaPredicted RBP13.41□□□□□ -0.26
USHBP1-207ENST00000597928 PHRF1Q9P1Y6 1649 aaKnown RBP13.4□□□□□ -0.26
USHBP1-207ENST00000597928 ALS2Q96Q42 1657 aa13.4□□□□□ -0.26
USHBP1-207ENST00000597928 LRRIQ4A6NIV6 560 aa13.4□□□□□ -0.26
USHBP1-207ENST00000597928 FOSP01100 380 aaPredicted RBP13.4□□□□□ -0.26
USHBP1-207ENST00000597928 MTERF2Q49AM1 385 aa13.4□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms