RNA–Protein interactions for RNA: ENST00000597172.5

TRIM28-208, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-208ENST00000597172 SCFD2Q8WU76 684 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 PNMA5Q96PV4 448 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 CLDND1Q9NY35 253 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 SLC9A2Q9UBY0 812 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 RALYQ9UKM9 306 aaKnown RBP10.57□□□□□ -0.72
TRIM28-208ENST00000597172 KCNH3Q9ULD8 1083 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 GRIN2DO15399 1336 aa10.57□□□□□ -0.72
TRIM28-208ENST00000597172 GSTTP1A0A1W2PQM5 241 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 CTAGE5O15320 804 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 POLR2DO15514 142 aaKnown RBP10.56□□□□□ -0.72
TRIM28-208ENST00000597172 TRAK2O60296 914 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 ZNF202O95125 648 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 ATG7O95352 703 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 GGPS1O95749 300 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 RFC2P35250 354 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 UBA7P41226 1012 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 SYKP43405 635 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 BEX3Q00994 111 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 KRT76Q01546 638 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 FAM160A1Q05DH4 1040 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 KARSQ15046 597 aaKnown RBP10.56□□□□□ -0.72
TRIM28-208ENST00000597172 E2F4Q16254 413 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 CCDC144BQ3MJ40 725 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 LONRF3Q496Y0 759 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 DUSP28Q4G0W2 176 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 TCEAL5Q5H9L2 206 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 HYIQ5T013 277 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 ZNF746Q6NUN9 644 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-208ENST00000597172 ABHD15Q6UXT9 468 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 CATSPER3Q86XQ3 398 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 DYDC2Q96IM9 177 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 PLIN2Q99541 437 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 EIF2AK1Q9BQI3 630 aaKnown RBP10.56□□□□□ -0.72
TRIM28-208ENST00000597172 SDF4Q9BRK5 362 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 POLR3CQ9BUI4 534 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-208ENST00000597172 RAB34Q9BZG1 259 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 JPH1Q9HDC5 661 aaPredicted RBP10.56□□□□□ -0.72
TRIM28-208ENST00000597172 DISC1Q9NRI5 854 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 DACT1Q9NYF0 836 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 FAM13BQ9NYF5 915 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 RGL1Q9NZL6 768 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 NAV2Q8IVL1 2488 aa10.56□□□□□ -0.72
TRIM28-208ENST00000597172 A0A087WWV3 80 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 LINC01553A4QN01 128 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 MBTPS2O43462 519 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 BAIAP3O94812 1187 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 CYP2C9P11712 490 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 RPA1P27694 616 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 LTBRP36941 435 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 CCT6AP40227 531 aaKnown RBP10.55□□□□□ -0.72
TRIM28-208ENST00000597172 ACTR2P61160 394 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 TNFAIP2Q03169 654 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 ARHGAP1Q07960 439 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 CLUL1Q15846 466 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 KLHL40Q2TBA0 621 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 SKOR2Q2VWA4 1001 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-208ENST00000597172 TMEM119Q4V9L6 283 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 NAALADL2Q58DX5 795 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 KRT79Q5XKE5 535 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 METTL7BQ6UX53 244 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 MIER3Q7Z3K6 550 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 TMCO2Q7Z6W1 182 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-208ENST00000597172 DHX37Q8IY37 1157 aaKnown RBP10.55□□□□□ -0.72
TRIM28-208ENST00000597172 PDILTQ8N807 584 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 GIMAP8Q8ND71 665 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-208ENST00000597172 FBXO22Q8NEZ5 403 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 SNX29Q8TEQ0 813 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 ASIC4Q96FT7 647 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 RAD9AQ99638 391 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 MLXIPQ9HAP2 919 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 WRAP73Q9P2S5 460 aaPredicted RBP10.55□□□□□ -0.72
TRIM28-208ENST00000597172 SERTAD1Q9UHV2 236 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 GNEQ9Y223 722 aaKnown RBP10.55□□□□□ -0.72
TRIM28-208ENST00000597172 MCM3APO60318 1980 aa10.55□□□□□ -0.72
TRIM28-208ENST00000597172 KIAA1217Q5T5P2 1943 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 IGKV6D-21A0A0A0MT36 114 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 WDR64B1ANS9 1081 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 SLC26A4O43511 780 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 NCK2O43639 380 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 ACTN4O43707 911 aaKnown RBP10.54□□□□□ -0.72
TRIM28-208ENST00000597172 MBD3O95983 291 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 GH1P01241 217 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 P4HBP07237 508 aaKnown RBP10.54□□□□□ -0.72
TRIM28-208ENST00000597172 SUPT20HL2P0C7V6 817 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 PLCG1P19174 1290 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 SFNP31947 248 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 JAK3P52333 1124 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 PSMC6P62333 389 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 NKX3-2P78367 333 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 SP4Q02446 784 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 CYP4A11Q02928 519 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 LAMC2Q13753 1193 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 CTTNQ14247 550 aaKnown RBP10.54□□□□□ -0.72
TRIM28-208ENST00000597172 ZRSR1Q15695 479 aaKnown RBP10.54□□□□□ -0.72
TRIM28-208ENST00000597172 HSDL1Q3SXM5 330 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 RRAGBQ5VZM2 374 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 PDXDC2PQ6P474 469 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 CCDC73Q6ZRK6 1079 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 KCNK18Q7Z418 384 aa10.54□□□□□ -0.72
TRIM28-208ENST00000597172 RPAINQ86UA6 219 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms