RNA–Protein interactions for RNA: ENST00000596672.5

LIG1-213, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 792 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-213ENST00000596672 DARSP14868 501 aaKnown RBP11.8□□□□□ -0.52
LIG1-213ENST00000596672 SFNP31947 248 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 NEK4P51957 841 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 PPP2R5CQ13362 524 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 LEXMQ3ZCV2 418 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 CLLU1OSQ5K130 101 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 PPP4R3AQ6IN85 833 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 SLC24A5Q71RS6 500 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 NEK8Q86SG6 692 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 ZNF598Q86UK7 904 aaKnown RBP11.8□□□□□ -0.52
LIG1-213ENST00000596672 TNPO1Q92973 898 aaKnown RBP11.8□□□□□ -0.52
LIG1-213ENST00000596672 FAM167AQ96KS9 214 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 CASD1Q96PB1 797 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 C11orf16Q9NQ32 467 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 NRBP2Q9NSY0 501 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 TYW1Q9NV66 732 aaKnown RBP11.8□□□□□ -0.52
LIG1-213ENST00000596672 AKT3Q9Y243 479 aa11.8□□□□□ -0.52
LIG1-213ENST00000596672 A0A087WZ62 844 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 GRXCR2A6NFK2 248 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 DDX11L8A8MPP1 907 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 B4GALT3O60512 393 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 TBX10O75333 385 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 MMP1P03956 469 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 RPLP2P05387 115 aaKnown RBP11.79□□□□□ -0.52
LIG1-213ENST00000596672 EIF4BP23588 611 aaKnown RBP11.79□□□□□ -0.52
LIG1-213ENST00000596672 PBX3P40426 434 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 ERVFC1P60507 584 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 XKR3Q5GH77 459 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 FAM177A1Q8N128 213 aaPredicted RBP11.79□□□□□ -0.52
LIG1-213ENST00000596672 VN1R2Q8NFZ6 395 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 RDM1Q8NG50 284 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 PABPC5Q96DU9 382 aaKnown RBP11.79□□□□□ -0.52
LIG1-213ENST00000596672 FDXACB1Q9BRP7 624 aaPredicted RBP11.79□□□□□ -0.52
LIG1-213ENST00000596672 TMEM60Q9H2L4 133 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 NSUN3Q9H649 340 aaKnown RBP11.79□□□□□ -0.52
LIG1-213ENST00000596672 MINDY3Q9H8M7 445 aa11.79□□□□□ -0.52
LIG1-213ENST00000596672 SEPT9Q9UHD8 586 aaPredicted RBP11.79□□□□□ -0.52
LIG1-213ENST00000596672 ZDBF2Q9HCK1 2354 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 TECTAO75443 2155 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 CCDC194A0A1B0GVG4 234 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 TBKBP1A7MCY6 615 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 GPR182O15218 404 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 CCNT1O60563 726 aaKnown RBP11.78□□□□□ -0.52
LIG1-213ENST00000596672 MAFO75444 373 aaPredicted RBP11.78□□□□□ -0.52
LIG1-213ENST00000596672 SLITRK3O94933 977 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 GLP2RO95838 553 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 CPLX2Q6PUV4 134 aaKnown RBP11.78□□□□□ -0.52
LIG1-213ENST00000596672 ECHDC2Q86YB7 292 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 FAM178BQ8IXR5 827 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 FEZF2Q8TBJ5 459 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 POF1BQ8WVV4 589 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 P2RX5Q93086 422 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 DYDC2Q96IM9 177 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 C11orf84Q9BUA3 381 aaPredicted RBP11.78□□□□□ -0.52
LIG1-213ENST00000596672 C22orf23Q9BZE7 217 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 IFT122Q9HBG6 1241 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 XPNPEP1Q9NQW7 623 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 BMP2KQ9NSY1 1161 aaPredicted RBP11.78□□□□□ -0.52
LIG1-213ENST00000596672 CLEC1BQ9P126 229 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 CEP131Q9UPN4 1083 aa11.78□□□□□ -0.52
LIG1-213ENST00000596672 DENND3A2RUS2 1198 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 CDKL5O76039 1030 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 STAG3L1P0CL83 205 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 AFF1P51825 1210 aaKnown RBP11.77□□□□□ -0.53
LIG1-213ENST00000596672 PSMC5P62195 406 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 GUCY1B3Q02153 619 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 TBC1D8BQ0IIM8 1120 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 ADAM15Q13444 863 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 CTTNQ14247 550 aaKnown RBP11.77□□□□□ -0.53
LIG1-213ENST00000596672 CLUL1Q15846 466 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 PTPROQ16827 1216 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 AAK1Q2M2I8 961 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 TIGD5Q53EQ6 642 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 PTCRAQ6ISU1 281 aaPredicted RBP11.77□□□□□ -0.53
LIG1-213ENST00000596672 DIS3L2Q8IYB7 885 aaKnown RBP11.77□□□□□ -0.53
LIG1-213ENST00000596672 COLGALT1Q8NBJ5 622 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 TMEM143Q96AN5 459 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 FAM20AQ96MK3 541 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 MTMR9Q96QG7 549 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 HSD17B14Q9BPX1 270 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 PLVAPQ9BX97 442 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 LMAN2LQ9H0V9 348 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 DHX33Q9H6R0 707 aaKnown RBP11.77□□□□□ -0.53
LIG1-213ENST00000596672 CYP26B1Q9NR63 512 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 C1orf112Q9NSG2 853 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 TMEM161AQ9NX61 479 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 SUCLA2Q9P2R7 463 aaPredicted RBP11.77□□□□□ -0.53
LIG1-213ENST00000596672 PCDHB7Q9Y5E2 793 aa11.77□□□□□ -0.53
LIG1-213ENST00000596672 ZNF318Q5VUA4 2279 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 MYO10Q9HD67 2058 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 FSCN2O14926 492 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 HOXA11P31270 313 aaPredicted RBP11.76□□□□□ -0.53
LIG1-213ENST00000596672 KRT2P35908 639 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 QARSP47897 775 aaKnown RBP11.76□□□□□ -0.53
LIG1-213ENST00000596672 CYP4A11Q02928 519 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 ANKRD1Q15327 319 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 EPHA7Q15375 998 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 LONRF3Q496Y0 759 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 UBXN11Q5T124 520 aa11.76□□□□□ -0.53
LIG1-213ENST00000596672 TMEM173Q86WV6 379 aaPredicted RBP11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms