RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 SLC24A5Q71RS6 500 aa14.65□□□□□ -0.06
LIG1-212ENST00000596549 ZNF579Q8NAF0 562 aaKnown RBP14.65□□□□□ -0.06
LIG1-212ENST00000596549 UHRF1Q96T88 793 aaPredicted RBP14.65□□□□□ -0.06
LIG1-212ENST00000596549 LXNQ9BS40 222 aa14.65□□□□□ -0.06
LIG1-212ENST00000596549 C11orf84Q9BUA3 381 aaPredicted RBP14.65□□□□□ -0.06
LIG1-212ENST00000596549 RNF19AQ9NV58 838 aa14.65□□□□□ -0.06
LIG1-212ENST00000596549 LIMCH1Q9UPQ0 1083 aa14.65□□□□□ -0.06
LIG1-212ENST00000596549 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP14.64□□□□□ -0.07
LIG1-212ENST00000596549 MAFO75444 373 aaPredicted RBP14.64□□□□□ -0.07
LIG1-212ENST00000596549 CSDE1O75534 798 aaKnown RBP14.64□□□□□ -0.07
LIG1-212ENST00000596549 CSPG5O95196 566 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 DNAJB1P25685 340 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 GUCY1B3Q02153 619 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 COL19A1Q14993 1142 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 AAK1Q2M2I8 961 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 NLRP7Q8WX94 980 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 P2RX5Q93086 422 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 DYDC2Q96IM9 177 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 LMAN2LQ9H0V9 348 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 NSUN3Q9H649 340 aaKnown RBP14.64□□□□□ -0.07
LIG1-212ENST00000596549 ALG13Q9NP73 1137 aaKnown RBP14.64□□□□□ -0.07
LIG1-212ENST00000596549 CYP26B1Q9NR63 512 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 TMEM161AQ9NX61 479 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 RGL1Q9NZL6 768 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 LRFN2Q9ULH4 789 aa14.64□□□□□ -0.07
LIG1-212ENST00000596549 A0A087WZ62 844 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 DDX11L8A8MPP1 907 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 TNFRSF10AO00220 468 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 ITGB1P05556 798 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 P4HBP07237 508 aaKnown RBP14.63□□□□□ -0.07
LIG1-212ENST00000596549 ATF7P17544 494 aaPredicted RBP14.63□□□□□ -0.07
LIG1-212ENST00000596549 RBM25P49756 843 aaKnown RBP14.63□□□□□ -0.07
LIG1-212ENST00000596549 FAM189BP81408 668 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 CYP4A11Q02928 519 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 EPHA7Q15375 998 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 FAM43BQ6ZT52 329 aaPredicted RBP14.63□□□□□ -0.07
LIG1-212ENST00000596549 KSR1Q8IVT5 923 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 C4orf19Q8IY42 314 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 SLFN12Q8IYM2 578 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 SCLT1Q96NL6 688 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 FDXACB1Q9BRP7 624 aaPredicted RBP14.63□□□□□ -0.07
LIG1-212ENST00000596549 PLVAPQ9BX97 442 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 ELAC1Q9H777 363 aaKnown RBP14.63□□□□□ -0.07
LIG1-212ENST00000596549 BMP2KQ9NSY1 1161 aaPredicted RBP14.63□□□□□ -0.07
LIG1-212ENST00000596549 PCDHB7Q9Y5E2 793 aa14.63□□□□□ -0.07
LIG1-212ENST00000596549 MYO7AQ13402 2215 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 TBKBP1A7MCY6 615 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 ZBTB39O15060 712 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 NEMFO60524 1076 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 YWHABP31946 246 aaKnown RBP14.62□□□□□ -0.07
LIG1-212ENST00000596549 TRIM29Q14134 588 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 CTTNQ14247 550 aaKnown RBP14.62□□□□□ -0.07
LIG1-212ENST00000596549 CALCRLQ16602 461 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 ECHDC2Q86YB7 292 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 RHPN2Q8IUC4 686 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 ZNF710Q8N1W2 664 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 KLHL23Q8NBE8 558 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 IL27Q8NEV9 243 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 NLRP4Q96MN2 994 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 MTMR9Q96QG7 549 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 TMEM60Q9H2L4 133 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 DHX33Q9H6R0 707 aaKnown RBP14.62□□□□□ -0.07
LIG1-212ENST00000596549 CWH43Q9H720 699 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 PLAGL2Q9UPG8 496 aa14.62□□□□□ -0.07
LIG1-212ENST00000596549 TDRD15B5MCY1 1934 aaKnown RBP14.62□□□□□ -0.07
LIG1-212ENST00000596549 TTC28Q96AY4 2481 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 POTEMA6NI47 508 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 DKC1O60832 514 aaKnown RBP eCLIP14.61□□□□□ -0.071e-6■■□□□ 12.5
LIG1-212ENST00000596549 KCNA5P22460 613 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 GTF2F1P35269 517 aaKnown RBP eCLIP14.61□□□□□ -0.07
LIG1-212ENST00000596549 IRS1P35568 1242 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 HYAL1Q12794 435 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 CLLU1OSQ5K130 101 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 ADGRD2Q7Z7M1 963 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 ZNF598Q86UK7 904 aaKnown RBP14.61□□□□□ -0.07
LIG1-212ENST00000596549 ZNF410Q86VK4 478 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.61□□□□□ -0.07
LIG1-212ENST00000596549 SPPL3Q8TCT6 385 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 NEK9Q8TD19 979 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 PABPC5Q96DU9 382 aaKnown RBP14.61□□□□□ -0.07
LIG1-212ENST00000596549 C8orf76Q96K31 380 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 CEP170P1Q96L14 293 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 CASD1Q96PB1 797 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 EIF2AK1Q9BQI3 630 aaKnown RBP14.61□□□□□ -0.07
LIG1-212ENST00000596549 LLPHQ9BRT6 129 aaKnown RBP14.61□□□□□ -0.07
LIG1-212ENST00000596549 TTC12Q9H892 705 aaPredicted RBP14.61□□□□□ -0.07
LIG1-212ENST00000596549 ATP6V0A4Q9HBG4 840 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 IFT122Q9HBG6 1241 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 SUCLA2Q9P2R7 463 aaPredicted RBP14.61□□□□□ -0.07
LIG1-212ENST00000596549 PCDHGC5Q9Y5F6 944 aa14.61□□□□□ -0.07
LIG1-212ENST00000596549 MARCH6O60337 910 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 SLITRK3O94933 977 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 BAG4O95429 457 aaKnown RBP14.6□□□□□ -0.07
LIG1-212ENST00000596549 IL9P15248 144 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 POLGP54098 1239 aaPredicted RBP14.6□□□□□ -0.07
LIG1-212ENST00000596549 EMC2Q15006 297 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 LEXMQ3ZCV2 418 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 NAALADL2Q58DX5 795 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 LRRC55Q6ZSA7 311 aa14.6□□□□□ -0.07
LIG1-212ENST00000596549 COLGALT1Q8NBJ5 622 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms