RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 SPG21Q9NZD8 308 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 GABBR1Q9UBS5 961 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 CEP131Q9UPN4 1083 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 PCDHA10Q9Y5I2 948 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 HCFC2Q9Y5Z7 792 aa11.3□□□□□ -0.6
LIG1-209ENST00000596104 A0A0U1RQF3 1178 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 KLF18A0A0U1RQI7 1052 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 C2orf71A6NGG8 1288 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 EDIL3O43854 480 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 PSAPP07602 524 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 DARSP14868 501 aaKnown RBP11.29□□□□□ -0.6
LIG1-209ENST00000596104 SP100P23497 879 aaPredicted RBP11.29□□□□□ -0.6
LIG1-209ENST00000596104 ADD1P35611 737 aaKnown RBP11.29□□□□□ -0.6
LIG1-209ENST00000596104 GPC3P51654 580 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 KRT17Q04695 432 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 EFCAB12Q6NXP0 572 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 ABI1Q8IZP0 508 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 ZNF710Q8N1W2 664 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 KREMEN2Q8NCW0 462 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 CASP10Q92851 521 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 ZNF668Q96K58 619 aaPredicted RBP11.29□□□□□ -0.6
LIG1-209ENST00000596104 FAM167AQ96KS9 214 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 SNX27Q96L92 541 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 RIPOR3Q96MK2 946 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 MAP7D2Q96T17 732 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 ADAM7Q9H2U9 754 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 POMKQ9H5K3 350 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 AKT3Q9Y243 479 aa11.29□□□□□ -0.6
LIG1-209ENST00000596104 FNDC1Q4ZHG4 1894 aaPredicted RBP11.29□□□□□ -0.6
LIG1-209ENST00000596104 C2CD4DB7Z1M9 353 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 GFRA3O60609 400 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 CLASP2O75122 1294 aaKnown RBP11.28□□□□□ -0.6
LIG1-209ENST00000596104 BRD1O95696 1058 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 OATP04181 439 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 ZSCAN20P17040 1043 aaPredicted RBP11.28□□□□□ -0.6
LIG1-209ENST00000596104 TMOD1P28289 359 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 NUBP1P53384 320 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 SMC1AQ14683 1233 aaKnown RBP11.28□□□□□ -0.6
LIG1-209ENST00000596104 TPRNQ4KMQ1 711 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 PRR16Q569H4 304 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 MCTP2Q6DN12 878 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 REXO1Q8N1G1 1221 aaKnown RBP11.28□□□□□ -0.6
LIG1-209ENST00000596104 NECTIN4Q96NY8 510 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 IRF2BPLQ9H1B7 796 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 SORCS3Q9UPU3 1222 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 NR2E1Q9Y466 385 aa11.28□□□□□ -0.6
LIG1-209ENST00000596104 ZFHX2Q9C0A1 2572 aaPredicted RBP11.27□□□□□ -0.6
LIG1-209ENST00000596104 WDR64B1ANS9 1081 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 H0Y858 1186 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 GALR2O43603 387 aaPredicted RBP11.27□□□□□ -0.61
LIG1-209ENST00000596104 EOMESO95936 686 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 FGFR4P22455 802 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 IRX6P78412 446 aaPredicted RBP11.27□□□□□ -0.61
LIG1-209ENST00000596104 PRKCEQ02156 737 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 ITIH3Q06033 890 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 DRP2Q13474 957 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 TARBP2Q15633 366 aaKnown RBP11.27□□□□□ -0.61
LIG1-209ENST00000596104 UGCGQ16739 394 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 ZBTB33Q86T24 672 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 TMEM173Q86WV6 379 aaPredicted RBP11.27□□□□□ -0.61
LIG1-209ENST00000596104 UBALD2Q8IYN6 164 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 RNF169Q8NCN4 708 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 HELQQ8TDG4 1101 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 SMOC2Q9H3U7 446 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 C6orf50Q9HD87 102 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 TSHZ2Q9NRE2 1034 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 DISC1Q9NRI5 854 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 TCEAL9Q9UHQ7 104 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 KMT2EQ8IZD2 1858 aa11.27□□□□□ -0.61
LIG1-209ENST00000596104 NT5C1B-RDH14C9J2C7 533 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 PROB1E7EW31 1015 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 MSH4O15457 936 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 MTHFRP42898 656 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 METAP2P50579 478 aaKnown RBP eCLIP11.26□□□□□ -0.61
LIG1-209ENST00000596104 BCAR1P56945 870 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 MTMR3Q13615 1198 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 BMP2KLQ5H9B9 411 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 CES5AQ6NT32 575 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 TMEM105Q8N8V8 129 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 ATOH1Q92858 354 aaPredicted RBP11.26□□□□□ -0.61
LIG1-209ENST00000596104 CEP89Q96ST8 783 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 TRAIPQ9BWF2 469 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 MRPL9Q9BYD2 267 aaKnown RBP11.26□□□□□ -0.61
LIG1-209ENST00000596104 ZBP1Q9H171 429 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 NRBP2Q9NSY0 501 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 SAMM50Q9Y512 469 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 NID2Q14112 1375 aa11.26□□□□□ -0.61
LIG1-209ENST00000596104 LOXHD1Q8IVV2 1947 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 CCDC196A0A1B0GTZ2 297 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 PRPF3O43395 683 aaKnown RBP11.25□□□□□ -0.61
LIG1-209ENST00000596104 CSDE1O75534 798 aaKnown RBP11.25□□□□□ -0.61
LIG1-209ENST00000596104 STBD1O95210 358 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 CXCL14O95715 111 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 WEE2P0C1S8 567 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 CPA1P15085 419 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 GNA11P29992 359 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 ALDH7A1P49419 539 aaKnown RBP11.25□□□□□ -0.61
LIG1-209ENST00000596104 TBC1D8BQ0IIM8 1120 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 KRT32Q14532 448 aa11.25□□□□□ -0.61
LIG1-209ENST00000596104 RARS2Q5T160 578 aaKnown RBP11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms