RNA–Protein interactions for RNA: ENST00000594948.5

VRK3-209, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 2 BASIC

Gene VRK3, Length 1,847 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-209ENST00000594948 MAP2K2P36507 400 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 USP17L24Q0WX57 530 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 PABPC4Q13310 644 aaKnown RBP eCLIP14.37□□□□□ -0.11
VRK3-209ENST00000594948 QPCTQ16769 361 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 PREPLQ4J6C6 727 aaPredicted RBP14.37□□□□□ -0.11
VRK3-209ENST00000594948 TCERG1LQ5VWI1 586 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 USP17L6PQ6QN14 398 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 CTNNBL1Q8WYA6 563 aaPredicted RBP14.37□□□□□ -0.11
VRK3-209ENST00000594948 SGSM3Q96HU1 749 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 RBM17Q96I25 401 aaKnown RBP14.37□□□□□ -0.11
VRK3-209ENST00000594948 XPO6Q96QU8 1125 aaKnown RBP14.37□□□□□ -0.11
VRK3-209ENST00000594948 ERP44Q9BS26 406 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 TMEM109Q9BVC6 243 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 CNOT7Q9UIV1 285 aaKnown RBP14.37□□□□□ -0.11
VRK3-209ENST00000594948 RASAL2Q9UJF2 1139 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 PCDHA1Q9Y5I3 950 aa14.37□□□□□ -0.11
VRK3-209ENST00000594948 HLA-DOAP06340 250 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 SREBF1P36956 1147 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 PSMC6P62333 389 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 DR1Q01658 176 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 XRCC4Q13426 336 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 PICALMQ13492 652 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 PPP2R5AQ15172 486 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 WLSQ5T9L3 541 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 SLC51AQ86UW1 340 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CLEC10AQ8IUN9 316 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 SLC35G2Q8TBE7 412 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 TBC1D16Q8TBP0 767 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CCT6BQ92526 530 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 ZKSCAN4Q969J2 545 aaPredicted RBP14.36□□□□□ -0.11
VRK3-209ENST00000594948 LENG9Q96B70 501 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CHMP6Q96FZ7 201 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 PABPC3Q9H361 631 aaKnown RBP14.36□□□□□ -0.11
VRK3-209ENST00000594948 CCDC134Q9H6E4 229 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 ADAMTSL1Q8N6G6 1762 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 ZMYM2Q9UBW7 1377 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 PFASO15067 1338 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CCDC169A6NNP5 214 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 MIF4GDA9UHW6 222 aaKnown RBP14.36□□□□□ -0.11
VRK3-209ENST00000594948 ASAP2O43150 1006 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 TGFB1I1O43294 461 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 GCNT3O95395 438 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 GGPS1O95749 300 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 GSTA1P08263 222 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CASP4P49662 377 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 PRR5LQ6MZQ0 368 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 KCTD1Q719H9 257 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CPLX4Q7Z7G2 160 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 RHOT2Q8IXI1 618 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 FAM186BQ8IYM0 893 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 FUKQ8N0W3 1084 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 NEK9Q8TD19 979 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CELF4Q9BZC1 486 aaKnown RBP14.36□□□□□ -0.11
VRK3-209ENST00000594948 DPH5Q9H2P9 285 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 DDX4Q9NQI0 724 aaKnown RBP14.36□□□□□ -0.11
VRK3-209ENST00000594948 NYAP2Q9P242 653 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 SEL1LQ9UBV2 794 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 PARP2Q9UGN5 583 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 CCNL1Q9UK58 526 aaPredicted RBP14.36□□□□□ -0.11
VRK3-209ENST00000594948 VAV3Q9UKW4 847 aa14.36□□□□□ -0.11
VRK3-209ENST00000594948 SYNGAP1Q96PV0 1343 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 UBR3Q6ZT12 1888 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 ANKRD62A6NC57 917 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 DNM1LO00429 736 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 CYP3A4P08684 503 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 MUTP22033 750 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 MMP13P45452 471 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 SCTRP47872 440 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 FMO5P49326 533 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 KLRC3Q07444 240 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 ITIH4Q14624 930 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 KIF22Q14807 665 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 SNCBQ16143 134 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 PRR16Q569H4 304 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 TRAPPC3LQ5T215 181 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 DCAF12L1Q5VU92 463 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 C11orf63Q6NUN7 778 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 CYB5D1Q6P9G0 228 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 BTNL9Q6UXG8 535 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 COL23A1Q86Y22 540 aaPredicted RBP14.35□□□□□ -0.11
VRK3-209ENST00000594948 RUNDC3BQ96NL0 473 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 EPB41L4BQ9H329 900 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 TUFT1Q9NNX1 390 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 DNAJC12Q9UKB3 198 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 RABGAP1Q9Y3P9 1069 aa14.35□□□□□ -0.11
VRK3-209ENST00000594948 C21orf2O43822 256 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 PHF2O75151 1096 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 HOXA10P31260 410 aaPredicted RBP14.34□□□□□ -0.11
VRK3-209ENST00000594948 CHRNA3P32297 505 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 PMS2P54278 862 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 MYBPC2Q14324 1141 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 DRAP1Q14919 205 aaPredicted RBP14.34□□□□□ -0.11
VRK3-209ENST00000594948 KIAA1755Q5JYT7 1200 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 STXBP4Q6ZWJ1 553 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 PARP9Q8IXQ6 854 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 MORC4Q8TE76 937 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 ZNF317Q96PQ6 595 aaPredicted RBP14.34□□□□□ -0.11
VRK3-209ENST00000594948 TRIM51Q9BSJ1 452 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 AMNQ9BXJ7 453 aa14.34□□□□□ -0.11
VRK3-209ENST00000594948 COA1Q9GZY4 146 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms