RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 PLCB4Q15147 1175 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 MIS18BP1Q6P0N0 1132 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 SARM1Q6SZW1 724 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 ZBTB10Q96DT7 871 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 REEP2Q9BRK0 252 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 FGFBP2Q9BYJ0 223 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 STARD7Q9NQZ5 370 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 EXOC1Q9NV70 894 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 PANK4Q9NVE7 773 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 DACH1Q9UI36 760 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 MAPK8IP1Q9UQF2 711 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 SAMM50Q9Y512 469 aa11.59□□□□□ -0.55
VPS4B-204ENST00000589604 MAFBQ9Y5Q3 323 aaPredicted RBP11.59□□□□□ -0.55
VPS4B-204ENST00000589604 PDE4DIPQ5VU43 2346 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 BECN2A8MW95 431 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 RSPH10B2B2RC85 870 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 ZBTB42B2RXF5 422 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 BACH1O14867 736 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 KPNA6O60684 536 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 PSAPP07602 524 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 RSPH10BP0C881 870 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 IDEP14735 1019 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 ZNF18P17022 549 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 CAPN2P17655 700 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 RARRES1P49788 294 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 STAT5BP51692 787 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 PMS1P54277 932 aaKnown RBP11.58□□□□□ -0.56
VPS4B-204ENST00000589604 RAD51AP2Q09MP3 1159 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 PSMD2Q13200 908 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 TRIM60Q495X7 471 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 BRDTQ58F21 947 aaPredicted RBP11.58□□□□□ -0.56
VPS4B-204ENST00000589604 KLHL10Q6JEL2 608 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 ANO5Q75V66 913 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 TRMT1LQ7Z2T5 733 aaKnown RBP11.58□□□□□ -0.56
VPS4B-204ENST00000589604 AFAP1L1Q8TED9 768 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 TRAPPC12Q8WVT3 735 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 GLG1Q92896 1179 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 VTI1AQ96AJ9 217 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 GLT1D1Q96MS3 346 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 POLD4Q9HCU8 107 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 SLC39A2Q9NP94 309 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 ZNF302Q9NR11 478 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 FANCLQ9NW38 375 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 HDAC6Q9UBN7 1215 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 RWDD2AQ9UIY3 292 aa11.58□□□□□ -0.56
VPS4B-204ENST00000589604 TRIP12Q14669 1992 aaPredicted RBP11.58□□□□□ -0.56
VPS4B-204ENST00000589604 A0A0U1RQG5 324 aaPredicted RBP11.57□□□□□ -0.56
VPS4B-204ENST00000589604 GOLGA6L19H0YKK7 550 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 ARVCFO00192 962 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 CABYRO75952 493 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 ADCY5O95622 1261 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 SMIM10L2AP0DMW4 78 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 SMIM10L2BP0DMW5 78 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 ATP1A3P13637 1013 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 HOXC8P31273 242 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 YWHABP31946 246 aaKnown RBP11.57□□□□□ -0.56
VPS4B-204ENST00000589604 STX17P56962 302 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 MAPK7Q13164 816 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 MARCH8Q5T0T0 291 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 GDF6Q6KF10 455 aaPredicted RBP11.57□□□□□ -0.56
VPS4B-204ENST00000589604 PLPPR4Q7Z2D5 763 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 DAW1Q8N136 415 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 NELFBQ8WX92 580 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 SH2D3AQ9BRG2 576 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 GTPBP4Q9BZE4 634 aaKnown RBP11.57□□□□□ -0.56
VPS4B-204ENST00000589604 FAM117AQ9C073 453 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 TRPV6Q9H1D0 765 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 SMARCAD1Q9H4L7 1026 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 BMP2KQ9NSY1 1161 aaPredicted RBP11.57□□□□□ -0.56
VPS4B-204ENST00000589604 ANKEF1Q9NU02 776 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 TRMT13Q9NUP7 481 aaKnown RBP11.57□□□□□ -0.56
VPS4B-204ENST00000589604 CTNND2Q9UQB3 1225 aa11.57□□□□□ -0.56
VPS4B-204ENST00000589604 GUCY2CP25092 1073 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 ZNF131P52739 623 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 NPEPPSP55786 919 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 RTP1P59025 263 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 PRKCEQ02156 737 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 TLE2Q04725 743 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 FAM26FQ5R3K3 315 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 SPATA1Q5VX52 437 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 TTI2Q6NXR4 508 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 CCDC65Q8IXS2 484 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 WNT8BQ93098 351 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 CCDC47Q96A33 483 aaKnown RBP11.56□□□□□ -0.56
VPS4B-204ENST00000589604 DHTKD1Q96HY7 919 aaPredicted RBP11.56□□□□□ -0.56
VPS4B-204ENST00000589604 FIZ1Q96SL8 496 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 DUSP9Q99956 384 aaKnown RBP11.56□□□□□ -0.56
VPS4B-204ENST00000589604 SEMA6BQ9H3T3 888 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 PDLIM7Q9NR12 457 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 SAMSN1Q9NSI8 373 aaKnown RBP11.56□□□□□ -0.56
VPS4B-204ENST00000589604 SETD4Q9NVD3 440 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 ERAP1Q9NZ08 941 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 KCND2Q9NZV8 630 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 NFE2L3Q9Y4A8 694 aa11.56□□□□□ -0.56
VPS4B-204ENST00000589604 ARHGEF35A5YM69 484 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 TRIM49BA6NDI0 452 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 B4GALT4O60513 344 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 PQBP1O60828 265 aaKnown RBP11.55□□□□□ -0.56
VPS4B-204ENST00000589604 CD4P01730 458 aa11.55□□□□□ -0.56
VPS4B-204ENST00000589604 INSRRP14616 1297 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms