RNA–Protein interactions for RNA: ENST00000588059.5

VPS4B-202, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 5

Gene VPS4B, Length 1,252 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-202ENST00000588059 DHX15O43143 795 aaKnown RBP12.55□□□□□ -0.4
VPS4B-202ENST00000588059 PI15O43692 258 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CALM1P0DP23 149 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CALM2P0DP24 149 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CALM3P0DP25 149 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 EPCAMP16422 314 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 NPR3P17342 541 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CA8P35219 290 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 SREBF1P36956 1147 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 METAP2P50579 478 aaKnown RBP eCLIP12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CLCN3P51790 818 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 ANGPT1Q15389 498 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 ATAT1Q5SQI0 421 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 SWSAP1Q6NVH7 229 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 MIS18BP1Q6P0N0 1132 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 ZNF598Q86UK7 904 aaKnown RBP12.55□□□□□ -0.4
VPS4B-202ENST00000588059 METTL13Q8N6R0 699 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 RNF169Q8NCN4 708 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 HELQQ8TDG4 1101 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 AUTS2Q8WXX7 1259 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 BBXQ8WY36 941 aaPredicted RBP12.55□□□□□ -0.4
VPS4B-202ENST00000588059 ZBP1Q9H171 429 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 RIC8AQ9NPQ8 531 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CYP26B1Q9NR63 512 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 CNTNAP5Q8WYK1 1306 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 DMXL1Q9Y485 3027 aa12.55□□□□□ -0.4
VPS4B-202ENST00000588059 ZNF292O60281 2723 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 NT5C1B-RDH14C9J2C7 533 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 SGSM2O43147 1006 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 CXCL14O95715 111 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 FOSP01100 380 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-202ENST00000588059 ZSCAN20P17040 1043 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-202ENST00000588059 LIFRP42702 1097 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 BCAR1P56945 870 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 NLRP11P59045 1033 aaKnown RBP12.54□□□□□ -0.4
VPS4B-202ENST00000588059 NIPA1Q7RTP0 329 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 TMEM173Q86WV6 379 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-202ENST00000588059 TEX2Q8IWB9 1127 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 CKAP2LQ8IYA6 745 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 TMTC2Q8N394 836 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 LINC01465Q8N7H1 131 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 SLC22A17Q8WUG5 538 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 MAP4K1Q92918 833 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 TMEM169Q96HH4 297 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 TMEM87BQ96K49 555 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 ADAMTS10Q9H324 1103 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 MAFBQ9Y5Q3 323 aaPredicted RBP12.54□□□□□ -0.4
VPS4B-202ENST00000588059 RBM8AQ9Y5S9 174 aaKnown RBP12.54□□□□□ -0.4
VPS4B-202ENST00000588059 IRAK3Q9Y616 596 aa12.54□□□□□ -0.4
VPS4B-202ENST00000588059 IGLV3-22A0A075B6J6 115 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 A0A0U1RQF3 1178 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 FAM86B1E9PN63 330 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 FAM86B2P0C5J1 330 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 EIF4BP23588 611 aaKnown RBP12.53□□□□□ -0.4
VPS4B-202ENST00000588059 MCM5P33992 734 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 ALDH7A1P49419 539 aaKnown RBP12.53□□□□□ -0.4
VPS4B-202ENST00000588059 ADCY7P51828 1080 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 NAPAP54920 295 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 AP3B2Q13367 1082 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 TDGQ13569 410 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 BMS1Q14692 1282 aaKnown RBP12.53□□□□□ -0.4
VPS4B-202ENST00000588059 PPP1R18Q6NYC8 613 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 TMC5Q6UXY8 1006 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 TRMT1LQ7Z2T5 733 aaKnown RBP12.53□□□□□ -0.4
VPS4B-202ENST00000588059 MICU3Q86XE3 530 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 VPS52Q8N1B4 723 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 FANCBQ8NB91 859 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 DTWD2Q8NBA8 298 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 MAP7D2Q96T17 732 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 MRPL9Q9BYD2 267 aaKnown RBP12.53□□□□□ -0.4
VPS4B-202ENST00000588059 DUSP12Q9UNI6 340 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 AKT3Q9Y243 479 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 SLC12A7Q9Y666 1083 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 FANCMQ8IYD8 2048 aa12.53□□□□□ -0.4
VPS4B-202ENST00000588059 MED19A0JLT2 244 aaPredicted RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 IPO5O00410 1097 aaKnown RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 CTSAP10619 480 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF76P36508 570 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 CLK2P49760 499 aaKnown RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 POLGP54098 1239 aaPredicted RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 EFCAB12Q6NXP0 572 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 CCDC149Q6ZUS6 474 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 DDX53Q86TM3 631 aaKnown RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 CABP7Q86V35 215 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 PLA2G4DQ86XP0 818 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 SIX5Q8N196 739 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 LRRC71Q8N4P6 559 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 BCL7CQ8WUZ0 217 aaPredicted RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 ACSF2Q96CM8 615 aaPredicted RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 RMDN1Q96DB5 314 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 ZNF668Q96K58 619 aaPredicted RBP12.52□□□□□ -0.41
VPS4B-202ENST00000588059 RTP3Q9BQQ7 232 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 SFXN1Q9H9B4 322 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 CEP131Q9UPN4 1083 aa12.52□□□□□ -0.41
VPS4B-202ENST00000588059 DOCK8Q8NF50 2099 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 MAGEB2O15479 319 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 ZC3H11AO75152 810 aaKnown RBP eCLIP12.51□□□□□ -0.41
VPS4B-202ENST00000588059 DARSP14868 501 aaKnown RBP12.51□□□□□ -0.41
VPS4B-202ENST00000588059 FGFR4P22455 802 aa12.51□□□□□ -0.41
VPS4B-202ENST00000588059 GPC3P51654 580 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms