RNA–Protein interactions for RNA: ENST00000584655.5

RFFL-212, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 2 BASIC

Gene RFFL, Length 4,039 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-212ENST00000584655 THAP9Q9H5L6 903 aa11.23□□□□□ -0.61
RFFL-212ENST00000584655 DDX60LQ5H9U9 1706 aaKnown RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 FGFR1OPO95684 399 aaKnown RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 USP14P54578 494 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 HTRA3P83110 453 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 KCNB1Q14721 858 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 NYAP1Q6ZVC0 841 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 APOBEC3FQ8IUX4 373 aaKnown RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 GPC2Q8N158 579 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 AGO4Q9HCK5 861 aaKnown RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 REXO2Q9Y3B8 237 aaKnown RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 RASSF10A6NK89 507 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 GJB6O95452 261 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 P4HBP07237 508 aaKnown RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 CCND2P30279 289 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 HOXD13P35453 343 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 RARRES1P49788 294 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 LIG4P49917 911 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 KCNMA1Q12791 1236 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 LRRC55Q6ZSA7 311 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 BSNDQ8WZ55 320 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 POLR3FQ9H1D9 316 aaPredicted RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 PDE11AQ9HCR9 933 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 NID2Q14112 1375 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 SMIM23A6NLE4 172 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 ZNF263O14978 683 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 CALUO43852 315 aaPredicted RBP11.22□□□□□ -0.61
RFFL-212ENST00000584655 HERVK_113P62684 666 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 FAM47CQ5HY64 1035 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 ANO5Q75V66 913 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 CEP120Q8N960 986 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 DEPTORQ8TB45 409 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 COG1Q8WTW3 980 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 HSD17B14Q9BPX1 270 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 GLT8D2Q9H1C3 349 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 AZI2Q9H6S1 392 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 CYP39A1Q9NYL5 469 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 SALL4Q9UJQ4 1053 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 ANKRD31Q8N7Z5 1873 aa11.22□□□□□ -0.61
RFFL-212ENST00000584655 CYP3A7-CYP3A51PA0A087WV96 503 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 hCG_1984214I3L0E3 225 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 KRT86O43790 486 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 AFPP02771 609 aaKnown RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 TFAMQ00059 246 aaKnown RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 DMP1Q13316 513 aaPredicted RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 TTC19Q6DKK2 380 aaPredicted RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 ZNF713Q8N859 430 aaPredicted RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 SECISBP2LQ93073 1101 aaKnown RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 MTMR8Q96EF0 704 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 FNBP1Q96RU3 617 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 NAPGQ99747 312 aaPredicted RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 MOV10L1Q9BXT6 1211 aaKnown RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 HOXC10Q9NYD6 342 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 SLC9A2Q9UBY0 812 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 DNAJC12Q9UKB3 198 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 ZNF214Q9UL59 606 aaPredicted RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 ABT1Q9ULW3 272 aaKnown RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 SNCAIPQ9Y6H5 919 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 PVALEFA0A1B0GWK0 134 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 TTLL13PA6NNM8 815 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 WDR64B1ANS9 1081 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 TXNP10599 105 aaKnown RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 PTK2Q05397 1052 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 SLC9C1Q4G0N8 1177 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 PALB2Q86YC2 1186 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 CTNNBL1Q8WYA6 563 aaPredicted RBP11.21□□□□□ -0.61
RFFL-212ENST00000584655 SPATA33Q96N06 139 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 LRRC27Q9C0I9 530 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 PCDHA13Q9Y5I0 950 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 PCDHA10Q9Y5I2 948 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 CDH23Q9H251 3354 aa11.21□□□□□ -0.61
RFFL-212ENST00000584655 CCL15-CCL14A0A0B4J2E2 113 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 ZSCAN5CA6NGD5 496 aaPredicted RBP11.21□□□□□ -0.62
RFFL-212ENST00000584655 RPL13P26373 211 aaKnown RBP11.21□□□□□ -0.62
RFFL-212ENST00000584655 GUCY2FP51841 1108 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 HUNKP57058 714 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 TBX2Q13207 712 aaPredicted RBP11.21□□□□□ -0.62
RFFL-212ENST00000584655 STXBP2Q15833 593 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 CCL15Q16663 113 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 CPNE8Q86YQ8 564 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 RNF149Q8NC42 400 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 SLC20A1Q8WUM9 679 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 CUEDC2Q9H467 287 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 AKT3Q9Y243 479 aa11.21□□□□□ -0.62
RFFL-212ENST00000584655 VGLL3A8MV65 326 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 KCNK3O14649 394 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 CEP104O60308 925 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 GRIN3BO60391 1043 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 VTNP04004 478 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 DSG3P32926 999 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 ZBED6P86452 979 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 HLTFQ14527 1009 aaKnown RBP eCLIP11.2□□□□□ -0.62
RFFL-212ENST00000584655 DRAP1Q14919 205 aaPredicted RBP11.2□□□□□ -0.62
RFFL-212ENST00000584655 LPAR1Q92633 364 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 MMS19Q96T76 1030 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 AGPAT3Q9NRZ7 376 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 ADARB2Q9NS39 739 aaKnown RBP11.2□□□□□ -0.62
RFFL-212ENST00000584655 DNAJC17Q9NVM6 304 aaKnown RBP11.2□□□□□ -0.62
RFFL-212ENST00000584655 TGFB1I1O43294 461 aa11.2□□□□□ -0.62
RFFL-212ENST00000584655 TCF7P36402 384 aaPredicted RBP11.2□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms