RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 OR5AN1Q8NGI8 311 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 ANO3Q9BYT9 981 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 MTG2Q9H4K7 406 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 TOPORSQ9NS56 1045 aaPredicted RBP6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 INVSQ9Y283 1065 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 PTPN22Q9Y2R2 807 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 PHLDB1Q86UU1 1377 aa6.3□□□□□ -1.4
SMCHD1-204ENST00000581226 MYPNQ86TC9 1320 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 PRSS38A1L453 326 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 B4GALT3O60512 393 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 PRKD3O94806 890 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 PCDH8O95206 1070 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 CLEC2LP0C7M8 214 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 CDKN1CP49918 316 aaPredicted RBP6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 MEOX1P50221 254 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 ANTXR2P58335 489 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 PDCD1Q15116 288 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 LARP4Q71RC2 724 aaKnown RBP eCLIP6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 BMP8AQ7Z5Y6 402 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 COG1Q8WTW3 980 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 GPATCH3Q96I76 525 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 ADAM7Q9H2U9 754 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 VTA1Q9NP79 307 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 SLC5A4Q9NY91 659 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 SYNPO2Q9UMS6 1093 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 DUSP10Q9Y6W6 482 aa6.29□□□□□ -1.4
SMCHD1-204ENST00000581226 GOLGA8AA7E2F4 631 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 GOLGA8BA8MQT2 603 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 OPHN1O60890 802 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 NCLP19338 710 aaKnown RBP6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 CNR2P34972 360 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 PCOLCEQ15113 449 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 TRIM68Q6AZZ1 485 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 PLEKHH3Q7Z736 793 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 FERMT3Q86UX7 667 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 BCL6BQ8N143 479 aaPredicted RBP6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 PRPF38AQ8NAV1 312 aaKnown RBP6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 AHCYL2Q96HN2 611 aaKnown RBP6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 DYDC2Q96IM9 177 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 NOL10Q9BSC4 688 aaKnown RBP6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 BRINP2Q9C0B6 783 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 PITHD1Q9GZP4 211 aaPredicted RBP6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 DENND2AQ9ULE3 1009 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 USP18Q9UMW8 372 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 PPP2R3BQ9Y5P8 575 aa6.28□□□□□ -1.4
SMCHD1-204ENST00000581226 A0A0A6YYJ9 748 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 HOXA5P20719 270 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 MANFP55145 182 aaKnown RBP6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 SCAND1P57086 179 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 EVA1CP58658 441 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 ZNF568Q3ZCX4 644 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 ZMAT1Q5H9K5 638 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 CCDC62Q6P9F0 684 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 ARHGEF18Q6ZSZ5 1173 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 KIAA1683Q9H0B3 1180 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 FAM184BQ9ULE4 1060 aa6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 NOP58Q9Y2X3 529 aaKnown RBP6.27□□□□□ -1.41
SMCHD1-204ENST00000581226 MRE11P49959 708 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 GUCY2FP51841 1108 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 PPP2CBP62714 309 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 PPP2CAP67775 309 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 FAM50AQ14320 339 aaKnown RBP6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 SURF1Q15526 300 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 UGT8Q16880 541 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 CT83Q5H943 113 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 UBXN11Q5T124 520 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 KLHDC10Q6PID8 442 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 TTLL10Q6ZVT0 673 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 NECAB2Q7Z6G3 386 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 CMIPQ8IY22 773 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 HIST1H2AHQ96KK5 128 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 ACAP3Q96P50 834 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 HIST1H2AJQ99878 128 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 PUS7LQ9H0K6 701 aaKnown RBP6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 WNT8AQ9H1J5 351 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 JADE2Q9NQC1 790 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 POLR3BQ9NW08 1133 aaPredicted RBP6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 C14orf119Q9NWQ9 140 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 DNAI1Q9UI46 699 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 VWA7Q9Y334 891 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 NUMBLQ9Y6R0 609 aa6.26□□□□□ -1.41
SMCHD1-204ENST00000581226 PRICKLE3O43900 615 aaPredicted RBP6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 H2AFYO75367 372 aaKnown RBP6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 PFKMP08237 780 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 SESN2P58004 480 aaPredicted RBP6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 ADAM15Q13444 863 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 FSCN1Q16658 493 aaKnown RBP6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 ZNF827Q17R98 1081 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 PITRM1Q5JRX3 1037 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 ZFYVE27Q5T4F4 411 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 AGBL4Q5VU57 503 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 USP30Q70CQ3 517 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 CNTD1Q8N815 330 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 LMBR1Q8WVP7 490 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 GAB3Q8WWW8 586 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 EAF2Q96CJ1 260 aaPredicted RBP6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 WDR92Q96MX6 357 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 TEPSINQ96N21 525 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 OR10A2Q9H208 303 aa6.25□□□□□ -1.41
SMCHD1-204ENST00000581226 NR2E1Q9Y466 385 aa6.25□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms