RNA–Protein interactions for RNA: ENST00000580287.5

CDK5RAP3-217, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 1 (best)

Gene CDK5RAP3, Length 2,609 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-217ENST00000580287 TGFB3P10600 412 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 SREBF2Q12772 1141 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 MAPK7Q13164 816 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 NEDD9Q14511 834 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 TERF2Q15554 542 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 CELF3Q5SZQ8 465 aaKnown RBP13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 MIS18BP1Q6P0N0 1132 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 METTL7BQ6UX53 244 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 ABRAQ8N0Z2 381 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 MORC4Q8TE76 937 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 LENG1Q96BZ8 264 aaPredicted RBP13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 ZBTB10Q96DT7 871 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 SPATA33Q96N06 139 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 ZNF302Q9NR11 478 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 CCNE1P24864 410 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 HOXD13P35453 343 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 PBX1P40424 430 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 MTERF2Q49AM1 385 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 MAMDC4Q6UXC1 1216 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 RAD9BQ6WBX8 426 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 CNGA4Q8IV77 575 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 PPP1R13LQ8WUF5 828 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 MPHOSPH6Q99547 160 aaKnown RBP13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 TINF2Q9BSI4 451 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 KATNBL1Q9H079 304 aa13.96□□□□□ -0.17
CDK5RAP3-217ENST00000580287 ATG7O95352 703 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GCNT3O95395 438 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 ODR4Q5SWX8 454 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 MORN1Q5T089 497 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 MYOCDQ8IZQ8 938 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 ATP6V0A1Q93050 837 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 DHTKD1Q96HY7 919 aaPredicted RBP13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 PANX2Q96RD6 677 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GPR20Q99678 358 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 FAM53CQ9NYF3 392 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 NOP56O00567 594 aaKnown RBP13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 LYPLA2O95372 231 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 MUTP22033 750 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 FAM102BQ5T8I3 360 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CENPPQ6IPU0 288 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GUF1Q8N442 669 aaKnown RBP13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 SEPT1Q8WYJ6 367 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 FIZ1Q96SL8 496 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 KIFC3Q9BVG8 833 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 PARVGQ9HBI0 331 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 COL4A3BPQ9Y5P4 624 aa13.95□□□□□ -0.18
CDK5RAP3-217ENST00000580287 LRRC10BA6NIK2 292 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 SLC15A5A6NIM6 579 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 TNPO2O14787 897 aaKnown RBP13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CA12O43570 354 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 PSMD2Q13200 908 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 TTLL4Q14679 1199 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 SCFD2Q8WU76 684 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GLG1Q92896 1179 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 PCMTD1Q96MG8 357 aaPredicted RBP13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 DBR1Q9UK59 544 aaKnown RBP13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 MAFBQ9Y5Q3 323 aaPredicted RBP13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 BICDL2A1A5D9 508 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 SEC31AO94979 1220 aaKnown RBP13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CCDC175P0C221 793 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 MTIF2P46199 727 aaKnown RBP13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 STAT5BP51692 787 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 MAP2K5Q13163 448 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 RDM1Q8NG50 284 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 THAP9Q9H5L6 903 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GJD2Q9UKL4 321 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 TRPA1O75762 1119 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 SMPD1P17405 629 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 EEF1GP26641 437 aaKnown RBP13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 KRT9P35527 623 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CLCN6P51797 869 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 ACVR2BQ13705 512 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GPIHBP1Q8IV16 184 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 FAM178BQ8IXR5 827 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 AFG1LQ8WV93 481 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CYP26B1Q9NR63 512 aa13.94□□□□□ -0.18
CDK5RAP3-217ENST00000580287 IGKV6D-21A0A0A0MT36 114 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GUCY2CP25092 1073 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 PSMC4P43686 418 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 PEX3P56589 373 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 ARHGAP1Q07960 439 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 NOGQ13253 232 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 ACRBPQ8NEB7 543 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 TRAPPC12Q8WVT3 735 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 HHIPL1Q96JK4 782 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CNOT6LQ96LI5 555 aaKnown RBP13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 TUBGCP2Q9BSJ2 902 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 ZCCHC17Q9NP64 241 aaKnown RBP13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GABRQQ9UN88 632 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 TFR2Q9UP52 801 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 ITIH6Q6UXX5 1313 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 IGSF9BQ9UPX0 1349 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 GOLGA6L9A6NEM1 432 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CLIC2O15247 247 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 APLP1P51693 650 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 CHMP4BP1P59074 171 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 OTUD6AQ7L8S5 288 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 MNS1Q8NEH6 495 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 BSNDQ8WZ55 320 aa13.93□□□□□ -0.18
CDK5RAP3-217ENST00000580287 TMEM143Q96AN5 459 aa13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms