RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 PTPN11Q06124 597 aaPredicted RBP11.88□□□□□ -0.51
SS18-213ENST00000579640 STIM1Q13586 685 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 PPP2R5AQ15172 486 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 NFRKBQ6P4R8 1299 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 MTHFD1LQ6UB35 978 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 STXBP4Q6ZWJ1 553 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 MAEAQ7L5Y9 396 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 SESTD1Q86VW0 696 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 SFR1Q86XK3 245 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 LMBR1Q8WVP7 490 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 IFT74Q96LB3 600 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 GLT1D1Q96MS3 346 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 NAT10Q9H0A0 1025 aaKnown RBP11.88□□□□□ -0.51
SS18-213ENST00000579640 POLR3FQ9H1D9 316 aaPredicted RBP11.88□□□□□ -0.51
SS18-213ENST00000579640 PHF24Q9UPV7 400 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 C17orf102A2RUQ5 167 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 MBLAC1A4D2B0 266 aaPredicted RBP11.87□□□□□ -0.51
SS18-213ENST00000579640 H0YCG3 227 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 GJB1P08034 283 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 BMP6P22004 513 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 HOXC8P31273 242 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 ABCD1P33897 745 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 SMTNP53814 917 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 CHMP4BP1P59074 171 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 STK4Q13043 487 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 DMP1Q13316 513 aaPredicted RBP11.87□□□□□ -0.51
SS18-213ENST00000579640 ALCAMQ13740 583 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 MXD4Q14582 209 aaPredicted RBP11.87□□□□□ -0.51
SS18-213ENST00000579640 NBPF20Q3BBV1 942 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 DPCR1Q3MIW9 517 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 ODR4Q5SWX8 454 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 ISM2Q6H9L7 571 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 EFCAB12Q6NXP0 572 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 FAM178BQ8IXR5 827 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 LINC01465Q8N7H1 131 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 TRAPPC12Q8WVT3 735 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 SPIRE2Q8WWL2 714 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 PSPC1Q8WXF1 523 aaKnown RBP11.87□□□□□ -0.51
SS18-213ENST00000579640 SUGCTQ9HAC7 445 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 GPRC5CQ9NQ84 441 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 SETD4Q9NVD3 440 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 HDAC6Q9UBN7 1215 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 PCDHA2Q9Y5H9 948 aa11.87□□□□□ -0.51
SS18-213ENST00000579640 SFI1A8K8P3 1242 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 ASAP2O43150 1006 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 SGPL1O95470 568 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 ADAM17P78536 824 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 ANO6Q4KMQ2 910 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 MARCH8Q5T0T0 291 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 METTL13Q8N6R0 699 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 KIAA0895Q8NCT3 520 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 TMEM143Q96AN5 459 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 NTPCRQ9BSD7 190 aaKnown RBP11.86□□□□□ -0.51
SS18-213ENST00000579640 CRISPLD2Q9H0B8 497 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 ST6GALNAC4Q9H4F1 302 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 MRPL44Q9H9J2 332 aaKnown RBP11.86□□□□□ -0.51
SS18-213ENST00000579640 SLC39A2Q9NP94 309 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 GTF2IRD1Q9UHL9 959 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 GDAQ9Y2T3 454 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 UBE4BO95155 1302 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 SMIM35A0A1B0GVV1 85 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 EIF3DO15371 548 aaKnown RBP eCLIP11.86□□□□□ -0.51
SS18-213ENST00000579640 MYCP01106 439 aaPredicted RBP11.86□□□□□ -0.51
SS18-213ENST00000579640 RPLP2P05387 115 aaKnown RBP11.86□□□□□ -0.51
SS18-213ENST00000579640 NAMPTP43490 491 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 NCKAP1LP55160 1127 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 PEX3P56589 373 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 CDC42EP1Q00587 391 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 MYOCDQ8IZQ8 938 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 ZNF710Q8N1W2 664 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 GUF1Q8N442 669 aaKnown RBP11.86□□□□□ -0.51
SS18-213ENST00000579640 KCNN1Q92952 543 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 VTI1AQ96AJ9 217 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 FIZ1Q96SL8 496 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 MAP7D2Q96T17 732 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 BPIFA3Q9BQP9 254 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 DNAJC25Q9H1X3 360 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 POLD4Q9HCU8 107 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 SUCLA2Q9P2R7 463 aaPredicted RBP11.86□□□□□ -0.51
SS18-213ENST00000579640 PCDHB13Q9Y5F0 798 aa11.86□□□□□ -0.51
SS18-213ENST00000579640 PHLPP2Q6ZVD8 1323 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 A0A0U1RQG5 324 aaPredicted RBP11.85□□□□□ -0.51
SS18-213ENST00000579640 A0A1W2PQ45 241 aaPredicted RBP11.85□□□□□ -0.51
SS18-213ENST00000579640 A0A1W2PQY0 241 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 PPP1R3GB7ZBB8 358 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 PSMA7O14818 248 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 GCNT3O95395 438 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 CYP2C9P11712 490 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 GLRA2P23416 452 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 ERCC5P28715 1186 aaPredicted RBP11.85□□□□□ -0.51
SS18-213ENST00000579640 NPTX2P47972 431 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 SOX10P56693 466 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 MKRN4PQ13434 485 aaPredicted RBP11.85□□□□□ -0.51
SS18-213ENST00000579640 ITGA7Q13683 1181 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 TFDP1Q14186 410 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 BMT2Q1RMZ1 405 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 TAF2Q6P1X5 1199 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 EPM2AIP1Q7L775 607 aaPredicted RBP11.85□□□□□ -0.51
SS18-213ENST00000579640 ZNF720Q7Z2F6 126 aa11.85□□□□□ -0.51
SS18-213ENST00000579640 ADSSL1Q8N142 457 aa11.85□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms