RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 ZNF862O60290 1169 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 GPR32O75388 356 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 TDP2O95551 362 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 ID4P47928 161 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 GATMP50440 423 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 VCPP55072 806 aaKnown RBP15.43■□□□□ 0.06
CCDC40-216ENST00000576241 NONOQ15233 471 aaKnown RBP eCLIP15.43■□□□□ 0.06
CCDC40-216ENST00000576241 MIER3Q7Z3K6 550 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 KRT25Q7Z3Z0 450 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 FAM228AQ86W67 206 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 LRRC71Q8N4P6 559 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 SCLT1Q96NL6 688 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 IRF2BPLQ9H1B7 796 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 AAASQ9NRG9 546 aa15.43■□□□□ 0.06
CCDC40-216ENST00000576241 CYP3A7-CYP3A51PA0A087WV96 503 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 TBKBP1A7MCY6 615 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 C9IYK1 514 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 H0Y858 1186 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 MBTPS2O43462 519 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 EDIL3O43854 480 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 PSMD10O75832 226 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 ITGB1P05556 798 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 XBP1P17861 261 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 CYP3A7P24462 503 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 NLRP11P59045 1033 aaKnown RBP15.42■□□□□ 0.06
CCDC40-216ENST00000576241 TBC1D8BQ0IIM8 1120 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 HYAL1Q12794 435 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 UGCGQ16739 394 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 MOXD1Q6UVY6 613 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 KLHL23Q8NBE8 558 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 GJA10Q969M2 543 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 AIFM3Q96NN9 605 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 SLKQ9H2G2 1235 aaPredicted RBP15.42■□□□□ 0.06
CCDC40-216ENST00000576241 ATP6V0A4Q9HBG4 840 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 TLR9Q9NR96 1032 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 DDX25Q9UHL0 483 aaKnown RBP15.42■□□□□ 0.06
CCDC40-216ENST00000576241 PCDHB12Q9Y5F1 795 aa15.42■□□□□ 0.06
CCDC40-216ENST00000576241 PROB1E7EW31 1015 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 M0R2N6 131 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 KRT37O76014 449 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 ZSCAN20P17040 1043 aaPredicted RBP15.41■□□□□ 0.06
CCDC40-216ENST00000576241 ZXDAP98168 799 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 DLX2Q07687 328 aaPredicted RBP15.41■□□□□ 0.06
CCDC40-216ENST00000576241 LINC01465Q8N7H1 131 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 SPPL3Q8TCT6 385 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 ADAMTS10Q9H324 1103 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 IGFLR1Q9H665 355 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 ELAC1Q9H777 363 aaKnown RBP15.41■□□□□ 0.06
CCDC40-216ENST00000576241 TMEM161AQ9NX61 479 aa15.41■□□□□ 0.06
CCDC40-216ENST00000576241 SEPT9Q9UHD8 586 aaPredicted RBP15.41■□□□□ 0.06
CCDC40-216ENST00000576241 CCDC194A0A1B0GVG4 234 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 HOXA2O43364 376 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 FGFR1P11362 822 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 EIF4BP23588 611 aaKnown RBP15.4■□□□□ 0.06
CCDC40-216ENST00000576241 DNAJB1P25685 340 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 DNM2P50570 870 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 SCRN1Q12765 414 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 ANKRD1Q15327 319 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 NPY5RQ15761 445 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 INF2Q27J81 1249 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 CTC1Q2NKJ3 1217 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 LETM2Q2VYF4 491 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 MTERF2Q49AM1 385 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 XKR3Q5GH77 459 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 FAM102BQ5T8I3 360 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 ETNPPLQ8TBG4 499 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 POF1BQ8WVV4 589 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 NLRP7Q8WX94 980 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 KCNJ14Q9UNX9 436 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 CACNA1GO43497 2377 aa15.4■□□□□ 0.06
CCDC40-216ENST00000576241 PRR23AA6NEV1 266 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 AVPR2P30518 371 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 NDUFV1P49821 464 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 GPC3P51654 580 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 FAM189BP81408 668 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 CDC42EP1Q00587 391 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 UBE3AQ05086 875 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 CAMK1Q14012 370 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 DSC3Q14574 896 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 TARBP2Q15633 366 aaKnown RBP15.39■□□□□ 0.05
CCDC40-216ENST00000576241 THNSL1Q8IYQ7 743 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 ABI1Q8IZP0 508 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 MICAL1Q8TDZ2 1067 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 ZNF668Q96K58 619 aaPredicted RBP15.39■□□□□ 0.05
CCDC40-216ENST00000576241 MBOAT7Q96N66 472 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 PHF20Q9BVI0 1012 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 TYW1Q9NV66 732 aaKnown RBP15.39■□□□□ 0.05
CCDC40-216ENST00000576241 PPP4R2Q9NY27 417 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 EPG5Q9HCE0 2579 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 DMDP11532 3685 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 STK36Q9NRP7 1315 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 ATG2AQ2TAZ0 1938 aa15.39■□□□□ 0.05
CCDC40-216ENST00000576241 DDX11L8A8MPP1 907 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 DARSP14868 501 aaKnown RBP15.38■□□□□ 0.05
CCDC40-216ENST00000576241 GCFC2P16383 781 aaKnown RBP15.38■□□□□ 0.05
CCDC40-216ENST00000576241 LAG3P18627 525 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 GTF2F1P35269 517 aaKnown RBP eCLIP15.38■□□□□ 0.05
CCDC40-216ENST00000576241 ANAPC15P60006 121 aa15.38■□□□□ 0.05
CCDC40-216ENST00000576241 SMAD4Q13485 552 aaKnown RBP15.38■□□□□ 0.05
CCDC40-216ENST00000576241 B3GNT9Q6UX72 402 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms