RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 TMEM143Q96AN5 459 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 INO80BQ9C086 356 aaPredicted RBP17.02■□□□□ 0.32
SMG6-220ENST00000576218 TSPYL2Q9H2G4 693 aaPredicted RBP17.02■□□□□ 0.32
SMG6-220ENST00000576218 ADAMTS10Q9H324 1103 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 ATP6V0A4Q9HBG4 840 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 TUFT1Q9NNX1 390 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 C1orf112Q9NSG2 853 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 FOXD4L1Q9NU39 408 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 LRWD1Q9UFC0 647 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 PCDHB7Q9Y5E2 793 aa17.02■□□□□ 0.32
SMG6-220ENST00000576218 A0A087WZ62 844 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 LAD1O00515 517 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 ARHGEF15O94989 841 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 DARSP14868 501 aaKnown RBP17.01■□□□□ 0.31
SMG6-220ENST00000576218 CCT6AP40227 531 aaKnown RBP17.01■□□□□ 0.31
SMG6-220ENST00000576218 HTRA4P83105 476 aaPredicted RBP17.01■□□□□ 0.31
SMG6-220ENST00000576218 CUL4AQ13619 759 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 BTG3Q14201 252 aaPredicted RBP17.01■□□□□ 0.31
SMG6-220ENST00000576218 FAM43BQ6ZT52 329 aaPredicted RBP17.01■□□□□ 0.31
SMG6-220ENST00000576218 FBXO22Q8NEZ5 403 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 PIGOQ8TEQ8 1089 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 LINC01599Q8WXQ3 324 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 HSD17B14Q9BPX1 270 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 FDXACB1Q9BRP7 624 aaPredicted RBP17.01■□□□□ 0.31
SMG6-220ENST00000576218 ANKEF1Q9NU02 776 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 COL4A3BPQ9Y5P4 624 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 STK24Q9Y6E0 443 aa17.01■□□□□ 0.31
SMG6-220ENST00000576218 ADGRA3Q8IWK6 1321 aa17■□□□□ 0.31
SMG6-220ENST00000576218 LOXHD1Q8IVV2 1947 aa17■□□□□ 0.31
SMG6-220ENST00000576218 IGKV6-21A0A0C4DH24 114 aa17■□□□□ 0.31
SMG6-220ENST00000576218 RFXAPO00287 272 aa17■□□□□ 0.31
SMG6-220ENST00000576218 ZBTB39O15060 712 aa17■□□□□ 0.31
SMG6-220ENST00000576218 USO1O60763 962 aaKnown RBP17■□□□□ 0.31
SMG6-220ENST00000576218 LYPLA2O95372 231 aa17■□□□□ 0.31
SMG6-220ENST00000576218 SRGAP2CP0DJJ0 459 aa17■□□□□ 0.31
SMG6-220ENST00000576218 FGFR4P22455 802 aa17■□□□□ 0.31
SMG6-220ENST00000576218 SARSP49591 514 aaKnown RBP17■□□□□ 0.31
SMG6-220ENST00000576218 MYO9BQ13459 2157 aa17■□□□□ 0.31
SMG6-220ENST00000576218 CCDC85BQ15834 202 aaPredicted RBP17■□□□□ 0.31
SMG6-220ENST00000576218 DTHD1Q6ZMT9 781 aa17■□□□□ 0.31
SMG6-220ENST00000576218 CATSPER4Q7RTX7 472 aa17■□□□□ 0.31
SMG6-220ENST00000576218 ZNF579Q8NAF0 562 aaKnown RBP17■□□□□ 0.31
SMG6-220ENST00000576218 RNF169Q8NCN4 708 aa17■□□□□ 0.31
SMG6-220ENST00000576218 SLC17A8Q8NDX2 589 aa17■□□□□ 0.31
SMG6-220ENST00000576218 GDPD5Q8WTR4 605 aa17■□□□□ 0.31
SMG6-220ENST00000576218 NACC1Q96RE7 527 aa17■□□□□ 0.31
SMG6-220ENST00000576218 TMX1Q9H3N1 280 aa17■□□□□ 0.31
SMG6-220ENST00000576218 DHX33Q9H6R0 707 aaKnown RBP17■□□□□ 0.31
SMG6-220ENST00000576218 ARHGEF35A5YM69 484 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 DGAT1O75907 488 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 CTNNB1P35222 781 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 TOB1P50616 345 aaPredicted RBP16.99■□□□□ 0.31
SMG6-220ENST00000576218 FXR2P51116 673 aaKnown RBP eCLIP16.99■□□□□ 0.31
SMG6-220ENST00000576218 TFDP1Q14186 410 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 SKIV2LQ15477 1246 aaKnown RBP16.99■□□□□ 0.31
SMG6-220ENST00000576218 PAN2Q504Q3 1202 aaKnown RBP16.99■□□□□ 0.31
SMG6-220ENST00000576218 SPOUT1Q5T280 376 aaKnown RBP16.99■□□□□ 0.31
SMG6-220ENST00000576218 POTEGQ6S5H5 508 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 SLC24A5Q71RS6 500 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 BRAPQ7Z569 592 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 CATSPER3Q86XQ3 398 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 KSR1Q8IVT5 923 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 SNX29Q8TEQ0 813 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 PRPF31Q8WWY3 499 aaKnown RBP16.99■□□□□ 0.31
SMG6-220ENST00000576218 SAMD11Q96NU1 681 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 CEP89Q96ST8 783 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 C17orf80Q9BSJ5 609 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 POLR3CQ9BUI4 534 aaPredicted RBP16.99■□□□□ 0.31
SMG6-220ENST00000576218 RGS18Q9NS28 235 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 RWDD3Q9Y3V2 267 aa16.99■□□□□ 0.31
SMG6-220ENST00000576218 A0A087WWV3 80 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 MGEA5O60502 916 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 MED24O75448 989 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 CSDE1O75534 798 aaKnown RBP16.98■□□□□ 0.31
SMG6-220ENST00000576218 PHKA2P46019 1235 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 RARRES1P49788 294 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 ERVK-21P61565 698 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 LAMTOR4Q0VGL1 99 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 ZRSR1Q15695 479 aaKnown RBP16.98■□□□□ 0.31
SMG6-220ENST00000576218 KRT79Q5XKE5 535 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 SPRED2Q7Z698 418 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 RTN4RL1Q86UN2 441 aaPredicted RBP16.98■□□□□ 0.31
SMG6-220ENST00000576218 FERMT3Q86UX7 667 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 ABI1Q8IZP0 508 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 SP7Q8TDD2 431 aaPredicted RBP16.98■□□□□ 0.31
SMG6-220ENST00000576218 EIF4ENIF1Q9NRA8 985 aaKnown RBP16.98■□□□□ 0.31
SMG6-220ENST00000576218 DACT1Q9NYF0 836 aa16.98■□□□□ 0.31
SMG6-220ENST00000576218 PIN4Q9Y237 131 aaKnown RBP16.98■□□□□ 0.31
SMG6-220ENST00000576218 EPOPA6NHQ4 379 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 ASAP2O43150 1006 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 ERLIN2O94905 339 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 XRCC6P12956 609 aaKnown RBP eCLIP16.97■□□□□ 0.31
SMG6-220ENST00000576218 RPA1P27694 616 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 PRPHP41219 470 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 GRB10Q13322 594 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 ADGRE1Q14246 886 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 MXD4Q14582 209 aaPredicted RBP16.97■□□□□ 0.31
SMG6-220ENST00000576218 TWF2Q6IBS0 349 aaKnown RBP16.97■□□□□ 0.31
SMG6-220ENST00000576218 MAEAQ7L5Y9 396 aa16.97■□□□□ 0.31
SMG6-220ENST00000576218 TMEM192Q8IY95 271 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms