RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 TMEM132BQ14DG7 1078 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 PCNX4Q63HM2 1172 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 SWSAP1Q6NVH7 229 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 SEPT14Q6ZU15 432 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 TRIM58Q8NG06 486 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 IPO4Q8TEX9 1081 aaKnown RBP10.84□□□□□ -0.67
VPS53-206ENST00000570359 NOX5Q96PH1 765 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 FIZ1Q96SL8 496 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 RIT2Q99578 217 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 OLFML3Q9NRN5 406 aa10.84□□□□□ -0.67
VPS53-206ENST00000570359 NR3C2P08235 984 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 MYL7Q01449 175 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 TTLL12Q14166 644 aaPredicted RBP10.83□□□□□ -0.68
VPS53-206ENST00000570359 CYFIP1Q7L576 1253 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 HDAC7Q8WUI4 952 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 POP1Q99575 1024 aaKnown RBP10.83□□□□□ -0.68
VPS53-206ENST00000570359 TMEM51Q9NW97 253 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 TMOD4Q9NZQ9 345 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 SEPT9Q9UHD8 586 aaPredicted RBP10.83□□□□□ -0.68
VPS53-206ENST00000570359 STK24Q9Y6E0 443 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 ZRANB2O95218 330 aaKnown RBP eCLIP10.83□□□□□ -0.68
VPS53-206ENST00000570359 RPS12P25398 132 aaKnown RBP10.83□□□□□ -0.68
VPS53-206ENST00000570359 OAS2P29728 719 aaKnown RBP10.83□□□□□ -0.68
VPS53-206ENST00000570359 HNRNPH3P31942 346 aaKnown RBP10.83□□□□□ -0.68
VPS53-206ENST00000570359 FMO5P49326 533 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 CNTN2Q02246 1040 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 GADL1Q6ZQY3 521 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 GLYCTKQ8IVS8 523 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 CEP170P1Q96L14 293 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 OSBPL9Q96SU4 736 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 ACP6Q9NPH0 428 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 LARSQ9P2J5 1176 aaKnown RBP10.83□□□□□ -0.68
VPS53-206ENST00000570359 DNAJC12Q9UKB3 198 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 UBIAD1Q9Y5Z9 338 aa10.83□□□□□ -0.68
VPS53-206ENST00000570359 N4BP1O75113 896 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 CALCAP01258 141 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 USP14P54578 494 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 CDK17Q00537 523 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 SLC18A3Q16572 532 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 MTERF2Q49AM1 385 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 TREML2Q5T2D2 321 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 LMBRD2Q68DH5 695 aaPredicted RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 ZNF746Q6NUN9 644 aaPredicted RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 STXBP4Q6ZWJ1 553 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 HAUS6Q7Z4H7 955 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 CCDC102AQ96A19 550 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 AS3MTQ9HBK9 375 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 PDE11AQ9HCR9 933 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 SNX12Q9UMY4 172 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 EMSYQ7Z589 1322 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 KIF13BQ9NQT8 1826 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 FZD9O00144 591 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 PLA2G6O60733 806 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 HARSP12081 509 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 KRT13P13646 458 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 MARSP56192 900 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 DRAP1Q14919 205 aaPredicted RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 ASTE1Q2TB18 679 aaPredicted RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 PAPD7Q5XG87 772 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 KAT5Q92993 513 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 BICD1Q96G01 975 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 ZNF668Q96K58 619 aaPredicted RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 INTS2Q9H0H0 1204 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 VPS33BQ9H267 617 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 METTL14Q9HCE5 456 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 SIX2Q9NPC8 291 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 A1CFQ9NQ94 594 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 TOPORSQ9NS56 1045 aaPredicted RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 JRKLQ9Y4A0 524 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 RPTORQ8N122 1335 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 DLATP10515 647 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 CCND2P30279 289 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 MAP2K1Q02750 393 aaPredicted RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 MAP3K10Q02779 954 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 PPARDQ03181 441 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 SMC1AQ14683 1233 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 ALKBH5Q6P6C2 394 aaKnown RBP10.82□□□□□ -0.68
VPS53-206ENST00000570359 ANKRD35Q8N283 1001 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 OTUD5Q96G74 571 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 LRRC1Q9BTT6 524 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 FUT8Q9BYC5 575 aa10.82□□□□□ -0.68
VPS53-206ENST00000570359 SSU72P8A0A1W2PR75 194 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 ESYT3A0FGR9 886 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 TMEM110-MUSTN1A8MSY1 372 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 WDR64B1ANS9 1081 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 EIF3DO15371 548 aaKnown RBP eCLIP10.81□□□□□ -0.68
VPS53-206ENST00000570359 EVI5O60447 810 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 MYBL2P10244 700 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 CKAP4Q07065 602 aaKnown RBP10.81□□□□□ -0.68
VPS53-206ENST00000570359 BMT2Q1RMZ1 405 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 IRF2BP2Q7Z5L9 587 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 ADAT2Q7Z6V5 191 aaKnown RBP10.81□□□□□ -0.68
VPS53-206ENST00000570359 NCAPG2Q86XI2 1143 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 CBWD2Q8IUF1 395 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 IQCDQ96DY2 449 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 R3HDMLQ9H3Y0 253 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 ELP3Q9H9T3 547 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 UBE2TQ9NPD8 197 aaPredicted RBP10.81□□□□□ -0.68
VPS53-206ENST00000570359 GPRC5DQ9NZD1 345 aa10.81□□□□□ -0.68
VPS53-206ENST00000570359 ODF2LQ9ULJ1 636 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms