RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 MLXIPQ9HAP2 919 aa8.79□□□□□ -1
VPS39-213ENST00000570062 TYW1Q9NV66 732 aaKnown RBP8.79□□□□□ -1
VPS39-213ENST00000570062 DAAM1Q9Y4D1 1078 aa8.79□□□□□ -1
VPS39-213ENST00000570062 PCDHA2Q9Y5H9 948 aa8.79□□□□□ -1
VPS39-213ENST00000570062 PHIPQ8WWQ0 1821 aa8.79□□□□□ -1
VPS39-213ENST00000570062 TNRC18O15417 2968 aaPredicted RBP8.78□□□□□ -1
VPS39-213ENST00000570062 A0A087WWV3 80 aa8.78□□□□□ -1
VPS39-213ENST00000570062 IGKV6D-21A0A0A0MT36 114 aa8.78□□□□□ -1
VPS39-213ENST00000570062 SLC15A5A6NIM6 579 aa8.78□□□□□ -1
VPS39-213ENST00000570062 LGALS16A8MUM7 142 aa8.78□□□□□ -1
VPS39-213ENST00000570062 DDX39AO00148 427 aaKnown RBP8.78□□□□□ -1
VPS39-213ENST00000570062 BACH1O14867 736 aa8.78□□□□□ -1
VPS39-213ENST00000570062 SLC16A3O15427 465 aaKnown RBP8.78□□□□□ -1
VPS39-213ENST00000570062 PLS3P13797 630 aa8.78□□□□□ -1
VPS39-213ENST00000570062 MTIF2P46199 727 aaKnown RBP8.78□□□□□ -1
VPS39-213ENST00000570062 COPB1P53618 953 aaKnown RBP8.78□□□□□ -1
VPS39-213ENST00000570062 PSMC6P62333 389 aa8.78□□□□□ -1
VPS39-213ENST00000570062 LAMC2Q13753 1193 aa8.78□□□□□ -1
VPS39-213ENST00000570062 PPP2R5AQ15172 486 aa8.78□□□□□ -1
VPS39-213ENST00000570062 KRT31Q15323 416 aa8.78□□□□□ -1
VPS39-213ENST00000570062 MAN2A1Q16706 1144 aa8.78□□□□□ -1
VPS39-213ENST00000570062 Q3C1V9 767 aa8.78□□□□□ -1
VPS39-213ENST00000570062 XKR9Q5GH70 373 aa8.78□□□□□ -1
VPS39-213ENST00000570062 FIGNQ5HY92 759 aa8.78□□□□□ -1
VPS39-213ENST00000570062 WDR78Q5VTH9 848 aa8.78□□□□□ -1
VPS39-213ENST00000570062 CST9Q5W186 159 aa8.78□□□□□ -1
VPS39-213ENST00000570062 MAMDC4Q6UXC1 1216 aa8.78□□□□□ -1
VPS39-213ENST00000570062 LIAT1Q6ZQX7 453 aa8.78□□□□□ -1
VPS39-213ENST00000570062 EPM2AIP1Q7L775 607 aaPredicted RBP8.78□□□□□ -1
VPS39-213ENST00000570062 PLPPR4Q7Z2D5 763 aa8.78□□□□□ -1
VPS39-213ENST00000570062 ZNF720Q7Z2F6 126 aa8.78□□□□□ -1
VPS39-213ENST00000570062 TMC6Q7Z403 805 aa8.78□□□□□ -1
VPS39-213ENST00000570062 FRMD5Q7Z6J6 570 aa8.78□□□□□ -1
VPS39-213ENST00000570062 PLEKHH3Q7Z736 793 aa8.78□□□□□ -1
VPS39-213ENST00000570062 USP37Q86T82 979 aa8.78□□□□□ -1
VPS39-213ENST00000570062 DPP9Q86TI2 863 aa8.78□□□□□ -1
VPS39-213ENST00000570062 FMNL3Q8IVF7 1028 aa8.78□□□□□ -1
VPS39-213ENST00000570062 BANK1Q8NDB2 785 aa8.78□□□□□ -1
VPS39-213ENST00000570062 PIGOQ8TEQ8 1089 aa8.78□□□□□ -1
VPS39-213ENST00000570062 SPIRE2Q8WWL2 714 aa8.78□□□□□ -1
VPS39-213ENST00000570062 IFT74Q96LB3 600 aa8.78□□□□□ -1
VPS39-213ENST00000570062 NTPCRQ9BSD7 190 aaKnown RBP8.78□□□□□ -1
VPS39-213ENST00000570062 TUBGCP2Q9BSJ2 902 aa8.78□□□□□ -1
VPS39-213ENST00000570062 MKNK1Q9BUB5 465 aa8.78□□□□□ -1
VPS39-213ENST00000570062 NIFKQ9BYG3 293 aaKnown RBP8.78□□□□□ -1
VPS39-213ENST00000570062 NUCKS1Q9H1E3 243 aaKnown RBP8.78□□□□□ -1
VPS39-213ENST00000570062 SEMA6BQ9H3T3 888 aa8.78□□□□□ -1
VPS39-213ENST00000570062 ZFYVE28Q9HCC9 887 aa8.78□□□□□ -1
VPS39-213ENST00000570062 ZNF302Q9NR11 478 aa8.78□□□□□ -1
VPS39-213ENST00000570062 GABBR1Q9UBS5 961 aa8.78□□□□□ -1
VPS39-213ENST00000570062 MAPK8IP1Q9UQF2 711 aa8.78□□□□□ -1
VPS39-213ENST00000570062 MAFBQ9Y5Q3 323 aaPredicted RBP8.78□□□□□ -1
VPS39-213ENST00000570062 LOC285556D6RIA3 1793 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 GOLGA6L9A6NEM1 432 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 AKR1B15C9JRZ8 316 aaPredicted RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 NOP56O00567 594 aaKnown RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 KIAA0391O15091 583 aaKnown RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 STX10O60499 249 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 GCNT3O95395 438 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 CCNE2O96020 404 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ADH1BP00325 375 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 OATP04181 439 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 STAT5BP51692 787 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 PRR20EP86478 221 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 PRR20CP86479 221 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 PRR20DP86480 221 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 PRR20BP86481 221 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 PRR20AP86496 221 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 CNTN2Q02246 1040 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 UBXN1Q04323 297 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ENPEPQ07075 957 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 TBC1D8BQ0IIM8 1120 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ADAM9Q13443 819 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ZNF792Q3KQV3 632 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ZCWPW2Q504Y3 356 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ODR4Q5SWX8 454 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ZNF697Q5TEC3 545 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 SWSAP1Q6NVH7 229 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 SEPT14Q6ZU15 432 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 SAPCD2Q86UD0 394 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 SFR1Q86XK3 245 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 SLC9A9Q8IVB4 645 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ZC3H3Q8IXZ2 948 aaKnown RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 DHX37Q8IY37 1157 aaKnown RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 ANKRD13CQ8N6S4 541 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 SCFD1Q8WVM8 642 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 SLC7A3Q8WY07 619 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 CEP170P1Q96L14 293 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 ACCSQ96QU6 501 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 PANX2Q96RD6 677 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 MED15Q96RN5 788 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 DUSP9Q99956 384 aaKnown RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 NOC4LQ9BVI4 516 aaKnown RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 SMARCAD1Q9H4L7 1026 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 TXNRD2Q9NNW7 524 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 NMRK2Q9NPI5 230 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 KCND1Q9NSA2 647 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 DDX41Q9UJV9 622 aaKnown RBP8.77□□□□□ -1.01
VPS39-213ENST00000570062 SYNGAP1Q96PV0 1343 aa8.77□□□□□ -1.01
VPS39-213ENST00000570062 RBM47A0AV96 593 aaKnown RBP8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms