RNA–Protein interactions for RNA: ENST00000569916.1

CNOT1-220, Transcript of CCR4-NOT transcription complex subunit 1, humanhuman

TSL 3

Gene CNOT1, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT1-220ENST00000569916 SLC17A8Q8NDX2 589 aa14.58□□□□□ -0.08
CNOT1-220ENST00000569916 GDPD5Q8WTR4 605 aa14.58□□□□□ -0.08
CNOT1-220ENST00000569916 ZNF689Q96CS4 500 aaPredicted RBP14.58□□□□□ -0.08
CNOT1-220ENST00000569916 JPH2Q9BR39 696 aaPredicted RBP14.58□□□□□ -0.08
CNOT1-220ENST00000569916 DHX33Q9H6R0 707 aaKnown RBP14.58□□□□□ -0.08
CNOT1-220ENST00000569916 C9IYK1 514 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 DGKIO75912 1065 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 LINC00271P0C7V0 271 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 POU3F3P20264 500 aaPredicted RBP14.57□□□□□ -0.08
CNOT1-220ENST00000569916 RFC5P40937 340 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 DNM2P50570 870 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 POLGP54098 1239 aaPredicted RBP14.57□□□□□ -0.08
CNOT1-220ENST00000569916 CUL4AQ13619 759 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 DSC3Q14574 896 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 XKR9Q5GH70 373 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 OTUD6AQ7L8S5 288 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 C4orf32Q8N8J7 132 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 NLRP7Q8WX94 980 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 SLC7A3Q8WY07 619 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 SCLT1Q96NL6 688 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 ADAM2Q99965 735 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 RGS18Q9NS28 235 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 SUCLA2Q9P2R7 463 aaPredicted RBP14.57□□□□□ -0.08
CNOT1-220ENST00000569916 SMC3Q9UQE7 1217 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.57□□□□□ -0.08
CNOT1-220ENST00000569916 MTCH2Q9Y6C9 303 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 REV3LO60673 3130 aa14.57□□□□□ -0.08
CNOT1-220ENST00000569916 A0A087WZ62 844 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 DENND3A2RUS2 1198 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 STAG3L1P0CL83 205 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 SPATA31C1P0DKV0 1188 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 TECP42680 631 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 SARSP49591 514 aaKnown RBP14.56□□□□□ -0.08
CNOT1-220ENST00000569916 CDC42EP1Q00587 391 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 EMC2Q15006 297 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 EPC2Q52LR7 807 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 ZNF410Q86VK4 478 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 RHPN2Q8IUC4 686 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.56□□□□□ -0.08
CNOT1-220ENST00000569916 EXOC8Q8IYI6 725 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 FIBCD1Q8N539 461 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 FBXO22Q8NEZ5 403 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 PPM1EQ8WY54 764 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 SAMD11Q96NU1 681 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 FDXACB1Q9BRP7 624 aaPredicted RBP14.56□□□□□ -0.08
CNOT1-220ENST00000569916 C1orf112Q9NSG2 853 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 BMP2KQ9NSY1 1161 aaPredicted RBP14.56□□□□□ -0.08
CNOT1-220ENST00000569916 PCDHB6Q9Y5E3 794 aa14.56□□□□□ -0.08
CNOT1-220ENST00000569916 PRRC2BQ5JSZ5 2229 aaKnown RBP14.56□□□□□ -0.08
CNOT1-220ENST00000569916 GTPBP6O43824 516 aaPredicted RBP14.55□□□□□ -0.08
CNOT1-220ENST00000569916 GAS2O43903 313 aaKnown RBP14.55□□□□□ -0.08
CNOT1-220ENST00000569916 MED24O75448 989 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 CSDE1O75534 798 aaKnown RBP14.55□□□□□ -0.08
CNOT1-220ENST00000569916 FGFR4P22455 802 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 CCDC85BQ15834 202 aaPredicted RBP14.55□□□□□ -0.08
CNOT1-220ENST00000569916 MCTP1Q6DN14 999 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 SLC24A5Q71RS6 500 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 CATSPER3Q86XQ3 398 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 KSR1Q8IVT5 923 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 TMEM143Q96AN5 459 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 NLRP4Q96MN2 994 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 GCOM2Q9BZD3 368 aaPredicted RBP14.55□□□□□ -0.08
CNOT1-220ENST00000569916 TUFT1Q9NNX1 390 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 XPNPEP1Q9NQW7 623 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 ANKEF1Q9NU02 776 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 COL4A3BPQ9Y5P4 624 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 UNC80Q8N2C7 3258 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 PRUNE2Q8WUY3 3088 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 PLXNA4Q9HCM2 1894 aa14.55□□□□□ -0.08
CNOT1-220ENST00000569916 H3BQV1 296 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 IBSPP21815 317 aaPredicted RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 RARRES1P49788 294 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 GATMP50440 423 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 FXR2P51116 673 aaKnown RBP eCLIP14.54□□□□□ -0.084e-15■■□□□ 11.7
CNOT1-220ENST00000569916 PTGDRQ13258 359 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 BTG3Q14201 252 aaPredicted RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 TMEM192Q8IY95 271 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 CMTR2Q8IYT2 770 aaKnown RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 MICALL1Q8N3F8 863 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 PIGOQ8TEQ8 1089 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 PRPF31Q8WWY3 499 aaKnown RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 PSPC1Q8WXF1 523 aaKnown RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 CLP1Q92989 425 aaKnown RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 MTRQ99707 1265 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 POLR3CQ9BUI4 534 aaPredicted RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 PRDM6Q9NQX0 595 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.54□□□□□ -0.08
CNOT1-220ENST00000569916 LRFN2Q9ULH4 789 aa14.54□□□□□ -0.08
CNOT1-220ENST00000569916 A0A087WWV3 80 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 C5orf67F2Z3F1 127 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 SFPQP23246 707 aaKnown RBP eCLIP14.53□□□□□ -0.08
CNOT1-220ENST00000569916 RPA1P27694 616 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 CTNNB1P35222 781 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 FAM189BP81408 668 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 RILPL1Q5EBL4 403 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 LARP1BQ659C4 914 aaKnown RBP14.53□□□□□ -0.08
CNOT1-220ENST00000569916 POTEGQ6S5H5 508 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 TCP11Q8WWU5 503 aa14.53□□□□□ -0.08
CNOT1-220ENST00000569916 ELAC1Q9H777 363 aaKnown RBP14.53□□□□□ -0.08
CNOT1-220ENST00000569916 ATP6V0A4Q9HBG4 840 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms