RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 GFOD1Q9NXC2 390 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 APEX2Q9UBZ4 518 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 CGGBP1Q9UFW8 167 aaPredicted RBP6.94□□□□□ -1.3
VPS39-209ENST00000568029 POLLQ9UGP5 575 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 ZC3H7BQ9UGR2 993 aaKnown RBP6.94□□□□□ -1.3
VPS39-209ENST00000568029 RNF112Q9ULX5 631 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 SNX14Q9Y5W7 946 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 MAP3K15Q6ZN16 1313 aa6.94□□□□□ -1.3
VPS39-209ENST00000568029 A0A1W2PQU0 124 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 EYA2O00167 538 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 NOP56O00567 594 aaKnown RBP6.93□□□□□ -1.3
VPS39-209ENST00000568029 ENPP3O14638 875 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 ADCY3O60266 1144 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 GSNP06396 782 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 FURINP09958 794 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 HSP90B1P14625 803 aaKnown RBP6.93□□□□□ -1.3
VPS39-209ENST00000568029 GPSM2P81274 684 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 CRHR2Q13324 411 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 CLEC16AQ2KHT3 1053 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 TAF7LQ5H9L4 462 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 GORABQ5T7V8 394 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 JAZF1Q86VZ6 243 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 ZNF227Q86WZ6 799 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 TRIM59Q8IWR1 403 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 ZNF34Q8IZ26 560 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 FIBCD1Q8N539 461 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 ZBTB38Q8NAP3 1195 aaPredicted RBP6.93□□□□□ -1.3
VPS39-209ENST00000568029 SUPT20HQ8NEM7 779 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 MAP4K1Q92918 833 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 CLMNQ96JQ2 1002 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 RNPC3Q96LT9 517 aaKnown RBP6.93□□□□□ -1.3
VPS39-209ENST00000568029 NEUROD6Q96NK8 337 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 MXD3Q9BW11 206 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 NYXQ9GZU5 481 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 SEMA6BQ9H3T3 888 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 SEMA3GQ9NS98 782 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 VAV3Q9UKW4 847 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 PALD1Q9ULE6 856 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 ISY1Q9ULR0 285 aaKnown RBP6.93□□□□□ -1.3
VPS39-209ENST00000568029 LIMCH1Q9UPQ0 1083 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 AKT3Q9Y243 479 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 CYP46A1Q9Y6A2 500 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 CCDC171Q6TFL3 1326 aa6.93□□□□□ -1.3
VPS39-209ENST00000568029 SPEF2Q9C093 1822 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 CCDC163A0A0D9SF12 145 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 SHISA3A0PJX4 238 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 BAG4O95429 457 aaKnown RBP6.92□□□□□ -1.3
VPS39-209ENST00000568029 ITGAVP06756 1048 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 CSF1RP07333 972 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 ITIH2P19823 946 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 BMP8BP34820 402 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 PRKCQQ04759 706 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 IFIT5Q13325 482 aaKnown RBP6.92□□□□□ -1.3
VPS39-209ENST00000568029 KRT32Q14532 448 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 HSP90AA2PQ14568 343 aaPredicted RBP6.92□□□□□ -1.3
VPS39-209ENST00000568029 NECTIN1Q15223 517 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 ANKRD1Q15327 319 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 CCDC158Q5M9N0 1113 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 VPS53Q5VIR6 699 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 ATG9AQ7Z3C6 839 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 SP8Q8IXZ3 490 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 STK11IPQ8N1F8 1099 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 PLD6Q8N2A8 252 aaKnown RBP6.92□□□□□ -1.3
VPS39-209ENST00000568029 LRRN4CLQ8ND94 238 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 PPIL4Q8WUA2 492 aaKnown RBP eCLIP6.92□□□□□ -1.3
VPS39-209ENST00000568029 CELF1Q92879 486 aaKnown RBP6.92□□□□□ -1.3
VPS39-209ENST00000568029 CCDC140Q96MF4 163 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 HSPA12BQ96MM6 686 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 DSCC1Q9BVC3 393 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 ARHGAP39Q9C0H5 1083 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 VPS33BQ9H267 617 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 PDRG1Q9NUG6 133 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 HMG20BQ9P0W2 317 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 DBNLQ9UJU6 430 aaKnown RBP6.92□□□□□ -1.3
VPS39-209ENST00000568029 SUGT1Q9Y2Z0 365 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.92□□□□□ -1.3
VPS39-209ENST00000568029 RFX7Q2KHR2 1363 aa6.92□□□□□ -1.3
VPS39-209ENST00000568029 GOLGA6L3A6NEY3 463 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 TGFB1P01137 390 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 PRNPP04156 253 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 CASTP20810 708 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 ENDOUP21128 410 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 ZNF280AP59817 542 aaPredicted RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 FKBP1BP68106 108 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 PTH1RQ03431 593 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 SREBF2Q12772 1141 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 CREB3L3Q68CJ9 461 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 SDE2Q6IQ49 451 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 NLRP10Q86W26 655 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 SYNPOQ8N3V7 929 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 ZGPATQ8N5A5 531 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 KBTBD3Q8NAB2 608 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 ZSWIM2Q8NEG5 633 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 ASB11Q8WXH4 323 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 DPF3Q92784 378 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 FAM89AQ96GI7 184 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 HRASLS5Q96KN8 279 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 FAM227BQ96M60 508 aa6.91□□□□□ -1.3
VPS39-209ENST00000568029 JAKMIP1Q96N16 626 aaKnown RBP6.91□□□□□ -1.3
VPS39-209ENST00000568029 PTPN18Q99952 460 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms