RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 TDHQ8IZJ6 230 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 ASAP3Q8TDY4 903 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 MAP7D2Q96T17 732 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 MTRQ99707 1265 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 CCSER1Q9C0I3 900 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 BLOC1S4Q9NUP1 217 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 PCDHA7Q9UN72 937 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 DNM3Q9UQ16 869 aa21.77■■□□□ 1.07
CLN3-225ENST00000566824 CSDE1O75534 798 aaKnown RBP21.76■■□□□ 1.07
CLN3-225ENST00000566824 DGAT1O75907 488 aa21.76■■□□□ 1.07
CLN3-225ENST00000566824 FAM109BQ6ICB4 259 aaPredicted RBP21.76■■□□□ 1.07
CLN3-225ENST00000566824 SHC4Q6S5L8 630 aa21.76■■□□□ 1.07
CLN3-225ENST00000566824 LEO1Q8WVC0 666 aaPredicted RBP21.76■■□□□ 1.07
CLN3-225ENST00000566824 HERVK_113Q902F9 699 aa21.76■■□□□ 1.07
CLN3-225ENST00000566824 CCDC43Q96MW1 224 aaKnown RBP21.76■■□□□ 1.07
CLN3-225ENST00000566824 RUSC1Q9BVN2 902 aa21.76■■□□□ 1.07
CLN3-225ENST00000566824 PANK2Q9BZ23 570 aa21.76■■□□□ 1.07
CLN3-225ENST00000566824 ATP6V0A4Q9HBG4 840 aa21.76■■□□□ 1.07
CLN3-225ENST00000566824 CFAP45Q9UL16 551 aa21.76■■□□□ 1.07
CLN3-225ENST00000566824 GBF1Q92538 1859 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 A0A087WZ62 844 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 M0QZ92 97 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 PARNO95453 639 aaKnown RBP21.75■■□□□ 1.07
CLN3-225ENST00000566824 RPLP2P05387 115 aaKnown RBP21.75■■□□□ 1.07
CLN3-225ENST00000566824 FGFR4P22455 802 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 ARL2P36404 184 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 DNM2P50570 870 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 CRYBB1P53674 252 aaPredicted RBP21.75■■□□□ 1.07
CLN3-225ENST00000566824 LAMTOR4Q0VGL1 99 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 CNKSR3Q6P9H4 555 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 CDK5RAP3Q96JB5 506 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 RNPC3Q96LT9 517 aaKnown RBP21.75■■□□□ 1.07
CLN3-225ENST00000566824 JPH2Q9BR39 696 aaPredicted RBP21.75■■□□□ 1.07
CLN3-225ENST00000566824 FDXACB1Q9BRP7 624 aaPredicted RBP21.75■■□□□ 1.07
CLN3-225ENST00000566824 GDPD2Q9HCC8 539 aa21.75■■□□□ 1.07
CLN3-225ENST00000566824 CUTAO60888 179 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 PFKMP08237 780 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 CYP11B2P19099 503 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 TSHZ1Q6ZSZ6 1077 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 FAM228AQ86W67 206 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 KCNG4Q8TDN1 519 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 BSNDQ8WZ55 320 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 NLRP4Q96MN2 994 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 IFIH1Q9BYX4 1025 aaKnown RBP21.74■■□□□ 1.07
CLN3-225ENST00000566824 POLR3FQ9H1D9 316 aaPredicted RBP21.74■■□□□ 1.07
CLN3-225ENST00000566824 PADI3Q9ULW8 664 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 COL4A3BPQ9Y5P4 624 aa21.74■■□□□ 1.07
CLN3-225ENST00000566824 LAMA2P24043 3122 aaKnown RBP21.73■■□□□ 1.07
CLN3-225ENST00000566824 NPHP3-ACAD11A0A0J9YXS1 232 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 SSBP05455 408 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLN3-225ENST00000566824 PLA2G4BP0C869 781 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 SRGAP2CP0DJJ0 459 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 GLRA2P23416 452 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 ME1P48163 572 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 SLC12A3P55017 1021 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 KRT85P78386 507 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 MCM6Q14566 821 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 NAALADL2Q58DX5 795 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 RINT1Q6NUQ1 792 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 C1orf186Q6ZWK4 172 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 TMCO2Q7Z6W1 182 aaPredicted RBP21.73■■□□□ 1.07
CLN3-225ENST00000566824 NLRP7Q8WX94 980 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 PSPC1Q8WXF1 523 aaKnown RBP21.73■■□□□ 1.07
CLN3-225ENST00000566824 CALML4Q96GE6 196 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 NT5C3AQ9H0P0 336 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 TMX1Q9H3N1 280 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 ERVK-5Q9HDB9 667 aa21.73■■□□□ 1.07
CLN3-225ENST00000566824 MYH11P35749 1972 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 ZBBXA8MT70 800 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 GRXCR1A8MXD5 290 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 SLC26A4O43511 780 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 DARSP14868 501 aaKnown RBP21.72■■□□□ 1.07
CLN3-225ENST00000566824 CAPSQ13938 189 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 DHX8Q14562 1220 aaKnown RBP21.72■■□□□ 1.07
CLN3-225ENST00000566824 ARSHQ5FYA8 562 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 FAM102BQ5T8I3 360 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.72■■□□□ 1.07
CLN3-225ENST00000566824 RTN4RL1Q86UN2 441 aaPredicted RBP21.72■■□□□ 1.07
CLN3-225ENST00000566824 EXOC8Q8IYI6 725 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 DAW1Q8N136 415 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 SYT2Q8N9I0 419 aaPredicted RBP21.72■■□□□ 1.07
CLN3-225ENST00000566824 TCP11Q8WWU5 503 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 LINC01599Q8WXQ3 324 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 SEPT8Q92599 483 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 SPATA32Q96LK8 384 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 MINDY3Q9H8M7 445 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 IFT122Q9HBG6 1241 aa21.72■■□□□ 1.07
CLN3-225ENST00000566824 LAMA3Q16787 3333 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 LOC101059915A0A1B0GWI6 518 aaPredicted RBP21.71■■□□□ 1.07
CLN3-225ENST00000566824 SOX1O00570 391 aaPredicted RBP21.71■■□□□ 1.07
CLN3-225ENST00000566824 GAS2O43903 313 aaKnown RBP21.71■■□□□ 1.07
CLN3-225ENST00000566824 MGEA5O60502 916 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 DEFB103AP81534 67 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 RAD51AP2Q09MP3 1159 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 MAPK7Q13164 816 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 HABP4Q5JVS0 413 aaKnown RBP21.71■■□□□ 1.07
CLN3-225ENST00000566824 PDILTQ8N807 584 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 RASSF8Q8NHQ8 419 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 RAD54LQ92698 747 aa21.71■■□□□ 1.07
CLN3-225ENST00000566824 SCLT1Q96NL6 688 aa21.71■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms