RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 LIN28BQ6ZN17 250 aaKnown RBP eCLIP19.27■□□□□ 0.68
CLN3-217ENST00000565354 OTUD6AQ7L8S5 288 aa19.27■□□□□ 0.68
CLN3-217ENST00000565354 WNT8BQ93098 351 aa19.27■□□□□ 0.68
CLN3-217ENST00000565354 WDR81Q562E7 1941 aa19.27■□□□□ 0.67
CLN3-217ENST00000565354 VWA3AA6NCI4 1184 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 H3BQ06 376 aaPredicted RBP19.26■□□□□ 0.67
CLN3-217ENST00000565354 RBAK-RBAKDNI3L0D1 243 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 DCXO43602 365 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 AMHP03971 560 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 RPLP2P05387 115 aaKnown RBP19.26■□□□□ 0.67
CLN3-217ENST00000565354 KLRC1P26715 233 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 ADAM17P78536 824 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 MKRN4PQ13434 485 aaPredicted RBP19.26■□□□□ 0.67
CLN3-217ENST00000565354 PKP1Q13835 747 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 PDIA5Q14554 519 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 FOXD4L6Q3SYB3 417 aaPredicted RBP19.26■□□□□ 0.67
CLN3-217ENST00000565354 TIGD5Q53EQ6 642 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 FOXD4L3Q6VB84 417 aaPredicted RBP19.26■□□□□ 0.67
CLN3-217ENST00000565354 C4orf19Q8IY42 314 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 SP7Q8TDD2 431 aaPredicted RBP19.26■□□□□ 0.67
CLN3-217ENST00000565354 SAMD11Q96NU1 681 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 FAM49AQ9H0Q0 323 aaPredicted RBP19.26■□□□□ 0.67
CLN3-217ENST00000565354 TUFT1Q9NNX1 390 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 CLIC4Q9Y696 253 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 C5orf42Q9H799 3197 aa19.26■□□□□ 0.67
CLN3-217ENST00000565354 MBLAC1A4D2B0 266 aaPredicted RBP19.25■□□□□ 0.67
CLN3-217ENST00000565354 MAGEB2O15479 319 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 SLITRK3O94933 977 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 YWHABP31946 246 aaKnown RBP19.25■□□□□ 0.67
CLN3-217ENST00000565354 CCT6AP40227 531 aaKnown RBP19.25■□□□□ 0.67
CLN3-217ENST00000565354 NHLH1Q02575 133 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 TBC1D8BQ0IIM8 1120 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 STK38Q15208 465 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 EPC2Q52LR7 807 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 MARCH8Q5T0T0 291 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 KRT79Q5XKE5 535 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 RUFY4Q6ZNE9 571 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 MYOCDQ8IZQ8 938 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 METTL13Q8N6R0 699 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 DBF4BQ8NFT6 615 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 SNX29Q8TEQ0 813 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 DNAJB3Q8WWF6 145 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 ZBTB10Q96DT7 871 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 CEP170P1Q96L14 293 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 KCNH6Q9H252 994 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 PCDHA2Q9Y5H9 948 aa19.25■□□□□ 0.67
CLN3-217ENST00000565354 MYH15Q9Y2K3 1946 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 M0QZ92 97 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 CAND2O75155 1236 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 CTSHP09668 335 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 TMOD1P28289 359 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 PLA2G4FQ68DD2 849 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 IGSF22Q8N9C0 903 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 USP28Q96RU2 1077 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 HSD17B14Q9BPX1 270 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 POLR3CQ9BUI4 534 aaPredicted RBP19.24■□□□□ 0.67
CLN3-217ENST00000565354 NIFKQ9BYG3 293 aaKnown RBP19.24■□□□□ 0.67
CLN3-217ENST00000565354 FAM50BQ9Y247 325 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 RALGAPA2Q2PPJ7 1873 aa19.24■□□□□ 0.67
CLN3-217ENST00000565354 SMIM35A0A1B0GVV1 85 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 TMEM150BA6NC51 233 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 RSPH10B2B2RC85 870 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 H3BNC9 293 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 MED24O75448 989 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 RSPH10BP0C881 870 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 RPA1P27694 616 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 ZP2Q05996 745 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 COL19A1Q14993 1142 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 ZRSR1Q15695 479 aaKnown RBP19.23■□□□□ 0.67
CLN3-217ENST00000565354 XKR9Q5GH70 373 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 ANO5Q75V66 913 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 PABPC5Q96DU9 382 aaKnown RBP19.23■□□□□ 0.67
CLN3-217ENST00000565354 FBXL18Q96ME1 805 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 JPH2Q9BR39 696 aaPredicted RBP19.23■□□□□ 0.67
CLN3-217ENST00000565354 SH2D3AQ9BRG2 576 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 WRAP73Q9P2S5 460 aaPredicted RBP19.23■□□□□ 0.67
CLN3-217ENST00000565354 PRKAG3Q9UGI9 489 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 ATG2AQ2TAZ0 1938 aa19.23■□□□□ 0.67
CLN3-217ENST00000565354 COL4A6Q14031 1691 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 ZBTB42B2RXF5 422 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 C22orf31O95567 290 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 BRD1O95696 1058 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 MARCKSP29966 332 aaPredicted RBP19.22■□□□□ 0.67
CLN3-217ENST00000565354 GPM6BQ13491 265 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 IL17AQ16552 155 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 PLEKHG4Q58EX7 1191 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 TCEAL5Q5H9L2 206 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 IER5Q5VY09 327 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 EFCAB12Q6NXP0 572 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 CATSPER3Q86XQ3 398 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 EXOC8Q8IYI6 725 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 RASSF8Q8NHQ8 419 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 CDK5RAP3Q96JB5 506 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 NACC1Q96RE7 527 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 MAP7D2Q96T17 732 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 CYP26B1Q9NR63 512 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 TFIP11Q9UBB9 837 aaKnown RBP19.22■□□□□ 0.67
CLN3-217ENST00000565354 AKT3Q9Y243 479 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 PPME1Q9Y570 386 aa19.22■□□□□ 0.67
CLN3-217ENST00000565354 ATP6V1DQ9Y5K8 247 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms