RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 SEL1LQ9UBV2 794 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 RPS6KL1Q9Y6S9 549 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 A0A0U1RQJ8 604 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 EIF3DO15371 548 aaKnown RBP eCLIP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 NDUFB5O43674 189 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 CTNND1O60716 968 aaKnown RBP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 RPL13P26373 211 aaKnown RBP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 KLK7P49862 253 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 ATP1A2P50993 1020 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 PRELPP51888 382 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 VAV2P52735 878 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 PLCB3Q01970 1234 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 KCNMA1Q12791 1236 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 PABPC4Q13310 644 aaKnown RBP eCLIP7.97□□□□□ -1.132e-12■■■■■ 31.3
HERPUD1-209ENST00000564678 RASA3Q14644 834 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 EPHA7Q15375 998 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 NFIL3Q16649 462 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 NBPF9Q3BBW0 867 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 CCDC122Q5T0U0 273 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 CCDC174Q6PII3 467 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 B3GNT9Q6UX72 402 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 KIAA1328Q86T90 577 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 ZNF454Q8N9F8 522 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 TSEN2Q8NCE0 465 aaKnown RBP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 ATRIPQ8WXE1 791 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 TBC1D5Q92609 795 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 NACC1Q96RE7 527 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 REEP2Q9BRK0 252 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 WDR18Q9BV38 432 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 KIAA1683Q9H0B3 1180 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 CEP72Q9P209 647 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 GUCA1BQ9UMX6 200 aa7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 UTP18Q9Y5J1 556 aaKnown RBP eCLIP7.97□□□□□ -1.13
HERPUD1-209ENST00000564678 FER1L6Q2WGJ9 1857 aa7.96□□□□□ -1.13
HERPUD1-209ENST00000564678 ATAD5Q96QE3 1844 aa7.96□□□□□ -1.13
HERPUD1-209ENST00000564678 NPHP3-ACAD11A0A0J9YXS1 232 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 CCDC189A1A4V9 331 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 ANO9A1A5B4 782 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 EML1O00423 815 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 NKRFO15226 690 aaKnown RBP eCLIP7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 GAS7O60861 476 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 TBCAO75347 108 aaKnown RBP7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 SLC34A2O95436 690 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 POLD1P28340 1107 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 WEE1P30291 646 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 CHMP4BP1P59074 171 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 HERVK_113P62684 666 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 KIF5AQ12840 1032 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 PLEKHG4Q58EX7 1191 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 RINT1Q6NUQ1 792 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 CACNA2D4Q7Z3S7 1137 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 DEFB132Q7Z7B7 95 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 LRRN4CLQ8ND94 238 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 BAP1Q92560 729 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 JAKMIP2Q96AA8 810 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 MXRA8Q9BRK3 442 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 BHMT2Q9H2M3 363 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 FAM207AQ9NSI2 230 aaPredicted RBP7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 TYW1Q9NV66 732 aaKnown RBP7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 FAM53CQ9NYF3 392 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 TBC1D7Q9P0N9 293 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 PNMA3Q9UL41 463 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 ODF2LQ9ULJ1 636 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 MYO6Q9UM54 1294 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 LOXHD1Q8IVV2 1947 aa7.96□□□□□ -1.14
HERPUD1-209ENST00000564678 SLC16A3O15427 465 aaKnown RBP7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 NR2F2P24468 414 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 USP14P54578 494 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 AMPD2Q01433 879 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 PAPD7Q5XG87 772 aaKnown RBP7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 PDXDC1Q6P996 788 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 TMCO3Q6UWJ1 677 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 STXBP4Q6ZWJ1 553 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 C1orf186Q6ZWK4 172 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 SFR1Q86XK3 245 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 TRIM50Q86XT4 487 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 NELFCDQ8IXH7 590 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 HOOK2Q96ED9 719 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 RPGRIP1Q96KN7 1286 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 TEPSINQ96N21 525 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 SRPK1Q96SB4 655 aaKnown RBP7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 ZNF577Q9BSK1 485 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 TEKT3Q9BXF9 490 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 ZNF341Q9BYN7 854 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 ZHX3Q9H4I2 956 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 RGL1Q9NZL6 768 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 ARHGAP20Q9P2F6 1191 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 NOD1Q9Y239 953 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 UBE4BO95155 1302 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 LTBP3Q9NS15 1303 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 IPO5O00410 1097 aaKnown RBP7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 NPR3P17342 541 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 CLCN6P51797 869 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 ZNF131P52739 623 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 CYP4A11Q02928 519 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 ZYXQ15942 572 aaKnown RBP7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 ASTE1Q2TB18 679 aaPredicted RBP7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 RRAGAQ7L523 313 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 TRAPPC11Q7Z392 1133 aa7.95□□□□□ -1.14
HERPUD1-209ENST00000564678 TPH2Q8IWU9 490 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms