RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 TTC30BQ8N4P2 665 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 STPG3Q8N7X2 389 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 ACRBPQ8NEB7 543 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 VPS37AQ8NEZ2 397 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 LOXL4Q96JB6 756 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 RBM15Q96T37 977 aaKnown RBP eCLIP6.04□□□□□ -1.44
VPS35-205ENST00000563984 TRIM39Q9HCM9 518 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 ARHGAP28Q9P2N2 729 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 ADAM29Q9UKF5 820 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 COQ6Q9Y2Z9 468 aa6.04□□□□□ -1.44
VPS35-205ENST00000563984 ZNF536O15090 1300 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 B4E1Z4 1266 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 IPO5O00410 1097 aaKnown RBP6.03□□□□□ -1.44
VPS35-205ENST00000563984 IPO7O95373 1038 aaKnown RBP6.03□□□□□ -1.44
VPS35-205ENST00000563984 IL18BPO95998 194 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 C4BPAP04003 597 aaKnown RBP6.03□□□□□ -1.44
VPS35-205ENST00000563984 CCDC172P0C7W6 258 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 ZNF853P0CG23 659 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 KCNA6P17658 529 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 CD53P19397 219 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 SQSTM1Q13501 440 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 CRB2Q5IJ48 1285 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 C1QTNF12Q5T7M4 302 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 EGFLAMQ63HQ2 1017 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 CPZQ66K79 652 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 SDE2Q6IQ49 451 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 CCDC73Q6ZRK6 1079 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 Q6ZUG5 572 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 OVCH1Q7RTY7 1134 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 FGD2Q7Z6J4 655 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 HSCBQ8IWL3 235 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 KBTBD2Q8IY47 623 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 Q8N1X5 172 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 CISD2Q8N5K1 135 aaKnown RBP6.03□□□□□ -1.44
VPS35-205ENST00000563984 NUDT10Q8NFP7 164 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 SH3TC2Q8TF17 1288 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 NUDT11Q96G61 164 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 ARPC5LQ9BPX5 153 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 CXorf56Q9H5V9 222 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 SLC39A2Q9NP94 309 aa6.03□□□□□ -1.44
VPS35-205ENST00000563984 CFAP65Q6ZU64 1925 aaKnown RBP6.03□□□□□ -1.44
VPS35-205ENST00000563984 SLC12A8A0AV02 714 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 H0Y858 1186 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 GOLGA6L22H0YM25 854 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 LAMTOR5O43504 91 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 TIMM44O43615 452 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 RAPGEF3O95398 923 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 C6P13671 934 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 PTGS1P23219 599 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 AOAHP28039 575 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 CCDC184Q52MB2 194 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 CCDC92Q53HC0 331 aaPredicted RBP6.02□□□□□ -1.45
VPS35-205ENST00000563984 LIMS2Q7Z4I7 341 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 NOSTRINQ8IVI9 506 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 REXO1L1PQ8IX06 675 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 SYNPOQ8N3V7 929 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 MNS1Q8NEH6 495 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 CCDC47Q96A33 483 aaKnown RBP6.02□□□□□ -1.45
VPS35-205ENST00000563984 AJUBAQ96IF1 538 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 C8orf49Q96NF6 230 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 TACO1Q9BSH4 297 aaKnown RBP6.02□□□□□ -1.45
VPS35-205ENST00000563984 C1QTNF3Q9BXJ4 246 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 BRINP2Q9C0B6 783 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 INCENPQ9NQS7 918 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 STK26Q9P289 416 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 ODF2LQ9ULJ1 636 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 ZDHHC9Q9Y397 364 aa6.02□□□□□ -1.45
VPS35-205ENST00000563984 PRAMEF25A6NGN4 478 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 GOLGA6L6A8MZA4 724 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 KCNK3O14649 394 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 KIF5CO60282 957 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 SETSIPP0DME0 302 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 IGFALSP35858 605 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 GDF5P43026 501 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 TBX4P57082 545 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 PPP2CBP62714 309 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 PPP2CAP67775 309 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 ARHGAP44Q17R89 818 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 TMEM177Q53S58 311 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 EFCAB2Q5VUJ9 269 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 ABHD17CQ6PCB6 329 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 GLB1LQ6UWU2 654 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 ARHGEF18Q6ZSZ5 1173 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 CATIPQ7Z7H3 387 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 DDX53Q86TM3 631 aaKnown RBP6.01□□□□□ -1.45
VPS35-205ENST00000563984 C2orf69Q8N8R5 385 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 IGSF22Q8N9C0 903 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 CLUHP3Q96NS8 147 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 C22orf23Q9BZE7 217 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 KATNBL1Q9H079 304 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 PNNQ9H307 717 aaKnown RBP6.01□□□□□ -1.45
VPS35-205ENST00000563984 SPC25Q9HBM1 224 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 KCNH7Q9NS40 1196 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 TMEM260Q9NX78 707 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 GALNT8Q9NY28 637 aa6.01□□□□□ -1.45
VPS35-205ENST00000563984 NOL7Q9UMY1 257 aaKnown RBP6.01□□□□□ -1.45
VPS35-205ENST00000563984 SCDO00767 359 aa6□□□□□ -1.45
VPS35-205ENST00000563984 B4GALT4O60513 344 aa6□□□□□ -1.45
VPS35-205ENST00000563984 CUTAO60888 179 aa6□□□□□ -1.45
VPS35-205ENST00000563984 HIP1RO75146 1068 aa6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms