RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 PTGDRQ13258 359 aa14.95□□□□□ -0.02
CLK3-213ENST00000563842 PDIA5Q14554 519 aa14.95□□□□□ -0.02
CLK3-213ENST00000563842 NPAS4Q8IUM7 802 aa14.95□□□□□ -0.02
CLK3-213ENST00000563842 SP7Q8TDD2 431 aaPredicted RBP14.95□□□□□ -0.02
CLK3-213ENST00000563842 TMEM40Q8WWA1 233 aa14.95□□□□□ -0.02
CLK3-213ENST00000563842 PSPC1Q8WXF1 523 aaKnown RBP14.95□□□□□ -0.02
CLK3-213ENST00000563842 SH2D3AQ9BRG2 576 aa14.95□□□□□ -0.02
CLK3-213ENST00000563842 POLR3CQ9BUI4 534 aaPredicted RBP14.95□□□□□ -0.02
CLK3-213ENST00000563842 DHX33Q9H6R0 707 aaKnown RBP14.95□□□□□ -0.02
CLK3-213ENST00000563842 COL4A6Q14031 1691 aa14.95□□□□□ -0.02
CLK3-213ENST00000563842 FNDC1Q4ZHG4 1894 aaPredicted RBP14.95□□□□□ -0.02
CLK3-213ENST00000563842 LINC01553A4QN01 128 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 K7ELQ4 463 aaPredicted RBP14.94□□□□□ -0.02
CLK3-213ENST00000563842 GTPBP6O43824 516 aaPredicted RBP14.94□□□□□ -0.02
CLK3-213ENST00000563842 DGAT1O75907 488 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 DARSP14868 501 aaKnown RBP14.94□□□□□ -0.02
CLK3-213ENST00000563842 RPA1P27694 616 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 PRPHP41219 470 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 TOB1P50616 345 aaPredicted RBP14.94□□□□□ -0.02
CLK3-213ENST00000563842 ERVK-21P61565 698 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 FAM228AQ86W67 206 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 RHPN2Q8IUC4 686 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 MAFAQ8NHW3 353 aaPredicted RBP14.94□□□□□ -0.02
CLK3-213ENST00000563842 ARNTL2Q8WYA1 636 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 NACC1Q96RE7 527 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 MTRQ99707 1265 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.94□□□□□ -0.02
CLK3-213ENST00000563842 RGS18Q9NS28 235 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 LRFN2Q9ULH4 789 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 PCDHB6Q9Y5E3 794 aa14.94□□□□□ -0.02
CLK3-213ENST00000563842 PRRC2BQ5JSZ5 2229 aaKnown RBP14.93□□□□□ -0.02
CLK3-213ENST00000563842 LCHNA4D1U4 455 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 IGFBP4P22692 258 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 SFPQP23246 707 aaKnown RBP eCLIP14.93□□□□□ -0.02
CLK3-213ENST00000563842 SARSP49591 514 aaKnown RBP14.93□□□□□ -0.02
CLK3-213ENST00000563842 DRP2Q13474 957 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 NBR1Q14596 966 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 EMC2Q15006 297 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 DTHD1Q6ZMT9 781 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 SLC24A5Q71RS6 500 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 BRAPQ7Z569 592 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 RTN4RL1Q86UN2 441 aaPredicted RBP14.93□□□□□ -0.02
CLK3-213ENST00000563842 CATSPER3Q86XQ3 398 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 FIBCD1Q8N539 461 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 C4orf32Q8N8J7 132 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 LINC01599Q8WXQ3 324 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 SNX21Q969T3 373 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 ADAM2Q99965 735 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 TMX1Q9H3N1 280 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 CERS4Q9HA82 394 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 LRWD1Q9UFC0 647 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 RWDD3Q9Y3V2 267 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 PCDHB7Q9Y5E2 793 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 COL4A3BPQ9Y5P4 624 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 CHD9Q3L8U1 2897 aa14.93□□□□□ -0.02
CLK3-213ENST00000563842 A0A087WZ62 844 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 BMP15O95972 392 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 SPATA31C1P0DKV0 1188 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 RARRES1P49788 294 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 MXD4Q14582 209 aaPredicted RBP14.92□□□□□ -0.02
CLK3-213ENST00000563842 ZNF579Q8NAF0 562 aaKnown RBP14.92□□□□□ -0.02
CLK3-213ENST00000563842 NLRP4Q96MN2 994 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 FDXACB1Q9BRP7 624 aaPredicted RBP14.92□□□□□ -0.02
CLK3-213ENST00000563842 ATP6V0A4Q9HBG4 840 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 CHST12Q9NRB3 414 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 DACT1Q9NYF0 836 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 DBR1Q9UK59 544 aaKnown RBP14.92□□□□□ -0.02
CLK3-213ENST00000563842 ADGRA3Q8IWK6 1321 aa14.92□□□□□ -0.02
CLK3-213ENST00000563842 MYH11P35749 1972 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 VPS37CA5D8V6 355 aaPredicted RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 C9IYK1 514 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 ZBTB39O15060 712 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 MED24O75448 989 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 DGKIO75912 1065 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 POU3F3P20264 500 aaPredicted RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 CCT6AP40227 531 aaKnown RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 TFDP1Q14186 410 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 BTG3Q14201 252 aaPredicted RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 KRT79Q5XKE5 535 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 ARL6IP4Q66PJ3 421 aaKnown RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 SRGAP1Q7Z6B7 1085 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 HSCBQ8IWL3 235 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 PHF6Q8IWS0 365 aaKnown RBP eCLIP14.91□□□□□ -0.02
CLK3-213ENST00000563842 CMTR2Q8IYT2 770 aaKnown RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 IGSF22Q8N9C0 903 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 PIGOQ8TEQ8 1089 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 PRPF31Q8WWY3 499 aaKnown RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 TMEM143Q96AN5 459 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 ZNF689Q96CS4 500 aaPredicted RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 ZNF668Q96K58 619 aaPredicted RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 ELAC1Q9H777 363 aaKnown RBP14.91□□□□□ -0.02
CLK3-213ENST00000563842 LMCD1Q9NZU5 365 aa14.91□□□□□ -0.02
CLK3-213ENST00000563842 COL4A4P53420 1690 aaPredicted RBP14.9□□□□□ -0.02
CLK3-213ENST00000563842 HOXA2O43364 376 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 MGEA5O60502 916 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 ARHGEF15O94989 841 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 SKIP12755 728 aa14.9□□□□□ -0.02
CLK3-213ENST00000563842 PDIA4P13667 645 aaKnown RBP14.9□□□□□ -0.02
CLK3-213ENST00000563842 ATP2C1P98194 919 aaPredicted RBP14.9□□□□□ -0.02
CLK3-213ENST00000563842 POU5F1BQ06416 359 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms