RNA–Protein interactions for RNA: ENST00000561673.1

CLK3-205, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 639 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-205ENST00000561673 KCNA5P22460 613 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 KRT2P35908 639 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 PSMC5P62195 406 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 CAMK1Q14012 370 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 LEXMQ3ZCV2 418 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 NAALADL2Q58DX5 795 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 ANO5Q75V66 913 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.56□□□□□ -0.56
CLK3-205ENST00000561673 TNFRSF25Q93038 417 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 P2RX5Q93086 422 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 LMAN2LQ9H0V9 348 aa11.56□□□□□ -0.56
CLK3-205ENST00000561673 C5orf42Q9H799 3197 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 TBKBP1A7MCY6 615 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 TBX3O15119 743 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 CSDE1O75534 798 aaKnown RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 MMP1P03956 469 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 ITGB1P05556 798 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 P4HBP07237 508 aaKnown RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 FGFR1P11362 822 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 DARSP14868 501 aaKnown RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 FGFR4P22455 802 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 DNAJB1P25685 340 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 QARSP47897 775 aaKnown RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 COL19A1Q14993 1142 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 PLA2G4FQ68DD2 849 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 KLHL23Q8NBE8 558 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 SPPL3Q8TCT6 385 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 NEK9Q8TD19 979 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 NLRP7Q8WX94 980 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 PABPC5Q96DU9 382 aaKnown RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 SCLT1Q96NL6 688 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 NAP1L4Q99733 375 aaKnown RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 ELAC1Q9H777 363 aaKnown RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 ATP6V0A4Q9HBG4 840 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 TMEM161AQ9NX61 479 aa11.55□□□□□ -0.56
CLK3-205ENST00000561673 WRAP73Q9P2S5 460 aaPredicted RBP11.55□□□□□ -0.56
CLK3-205ENST00000561673 BTBD18B2RXH4 712 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 H3BQ06 376 aaPredicted RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 MARCH6O60337 910 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 MAFO75444 373 aaPredicted RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 CSPG5O95196 566 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 ZSCAN20P17040 1043 aaPredicted RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 DNM2P50570 870 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 FOSBP53539 338 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 NPEPPSP55786 919 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 CDC42EP1Q00587 391 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 ST3GAL1Q11201 340 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 HYAL1Q12794 435 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 EPHA7Q15375 998 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 SLFN12Q8IYM2 578 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 ZNF579Q8NAF0 562 aaKnown RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 CASD1Q96PB1 797 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 BRMS1Q9HCU9 246 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 CYP26B1Q9NR63 512 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 TYW1Q9NV66 732 aaKnown RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 RGL1Q9NZL6 768 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 SUCLA2Q9P2R7 463 aaPredicted RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 HCSTQ9UBK5 93 aa11.54□□□□□ -0.56
CLK3-205ENST00000561673 MYH9P35579 1960 aaKnown RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 TCF20Q9UGU0 1960 aaKnown RBP11.54□□□□□ -0.56
CLK3-205ENST00000561673 EVPLQ92817 2033 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 LOXHD1Q8IVV2 1947 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 A0A087WZ62 844 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 NCK2O43639 380 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 BAG4O95429 457 aaKnown RBP11.53□□□□□ -0.56
CLK3-205ENST00000561673 GTF2F1P35269 517 aaKnown RBP eCLIP11.53□□□□□ -0.56
CLK3-205ENST00000561673 LTBRP36941 435 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 SPIRE1Q08AE8 756 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 CTC1Q2NKJ3 1217 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 SPOUT1Q5T280 376 aaKnown RBP11.53□□□□□ -0.56
CLK3-205ENST00000561673 NCAPH2Q6IBW4 605 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 PTCRAQ6ISU1 281 aaPredicted RBP11.53□□□□□ -0.56
CLK3-205ENST00000561673 LRRC55Q6ZSA7 311 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 EP400NLQ6ZTU2 488 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 ECHDC2Q86YB7 292 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 RHPN2Q8IUC4 686 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 KSR1Q8IVT5 923 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 DIS3L2Q8IYB7 885 aaKnown RBP11.53□□□□□ -0.56
CLK3-205ENST00000561673 POF1BQ8WVV4 589 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 DYDC2Q96IM9 177 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 CEP170P1Q96L14 293 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 FDXACB1Q9BRP7 624 aaPredicted RBP11.53□□□□□ -0.56
CLK3-205ENST00000561673 GCOM2Q9BZD3 368 aaPredicted RBP11.53□□□□□ -0.56
CLK3-205ENST00000561673 IGFLR1Q9H665 355 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 CWH43Q9H720 699 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 RNF19AQ9NV58 838 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 CLDND1Q9NY35 253 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 LIMCH1Q9UPQ0 1083 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 PCDHB12Q9Y5F1 795 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 RALGAPA2Q2PPJ7 1873 aa11.53□□□□□ -0.56
CLK3-205ENST00000561673 A0A0U1RQF3 1178 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 GRXCR2A6NFK2 248 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 WNT7AO00755 349 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 ZBTB39O15060 712 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 DKC1O60832 514 aaKnown RBP eCLIP11.52□□□□□ -0.57
CLK3-205ENST00000561673 SLITRK3O94933 977 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 PRKCSHP14314 528 aaPredicted RBP11.52□□□□□ -0.57
CLK3-205ENST00000561673 IL9P15248 144 aa11.52□□□□□ -0.57
CLK3-205ENST00000561673 YWHABP31946 246 aaKnown RBP11.52□□□□□ -0.57
CLK3-205ENST00000561673 IRS1P35568 1242 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms