RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 SAFB2Q14151 953 aaKnown RBP eCLIP6.97□□□□□ -1.29
VPS13C-208ENST00000559119 RRP1BQ14684 758 aaKnown RBP6.97□□□□□ -1.29
VPS13C-208ENST00000559119 SMN1Q16637 294 aaKnown RBP6.97□□□□□ -1.29
VPS13C-208ENST00000559119 FNDC7Q5VTL7 733 aa6.97□□□□□ -1.29
VPS13C-208ENST00000559119 DDX53Q86TM3 631 aaKnown RBP6.97□□□□□ -1.29
VPS13C-208ENST00000559119 C8orf37Q96NL8 207 aa6.97□□□□□ -1.29
VPS13C-208ENST00000559119 MAGEL2Q9UJ55 1249 aa6.97□□□□□ -1.29
VPS13C-208ENST00000559119 RBM8AQ9Y5S9 174 aaKnown RBP6.97□□□□□ -1.29
VPS13C-208ENST00000559119 A0A087X1B8 175 aa6.96□□□□□ -1.3
VPS13C-208ENST00000559119 FNTBP49356 437 aa6.96□□□□□ -1.3
VPS13C-208ENST00000559119 ACAP1Q15027 740 aa6.96□□□□□ -1.3
VPS13C-208ENST00000559119 SOGA3Q5TF21 947 aa6.96□□□□□ -1.3
VPS13C-208ENST00000559119 OTOP1Q7RTM1 612 aa6.96□□□□□ -1.3
VPS13C-208ENST00000559119 MKL1Q969V6 931 aa6.96□□□□□ -1.3
VPS13C-208ENST00000559119 RPL10LQ96L21 214 aaKnown RBP6.96□□□□□ -1.3
VPS13C-208ENST00000559119 HECAQ9UBI9 543 aaPredicted RBP6.96□□□□□ -1.3
VPS13C-208ENST00000559119 M0R2C6 588 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 PRLP01236 227 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 RGS3P49796 1198 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 KIF11P52732 1056 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 BPIFB4P59827 614 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 CNGB1Q14028 1251 aaPredicted RBP6.95□□□□□ -1.3
VPS13C-208ENST00000559119 DGKDQ16760 1214 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 JMYQ8N9B5 988 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 ANKRD53Q8N9V6 530 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 LARP4BQ92615 738 aaKnown RBP6.95□□□□□ -1.3
VPS13C-208ENST00000559119 MIEF2Q96C03 454 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 CLIP3Q96DZ5 547 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 NCOA5Q9HCD5 579 aaKnown RBP6.95□□□□□ -1.3
VPS13C-208ENST00000559119 TRIM39Q9HCM9 518 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 PTCH2Q9Y6C5 1203 aa6.95□□□□□ -1.3
VPS13C-208ENST00000559119 B4E1Z4 1266 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 TCIRG1Q13488 830 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 C2orf27AQ580R0 203 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 SLFN12LQ6IEE8 588 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 ZNF662Q6ZS27 426 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 GAREM2Q75VX8 874 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 GSPT2Q8IYD1 628 aaKnown RBP6.94□□□□□ -1.3
VPS13C-208ENST00000559119 OR5AN1Q8NGI8 311 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 MAML3Q96JK9 1138 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 PCIF1Q9H4Z3 704 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 ACSS2Q9NR19 701 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 SLC2A4RGQ9NR83 387 aa6.94□□□□□ -1.3
VPS13C-208ENST00000559119 UBA6A0AVT1 1052 aaPredicted RBP6.93□□□□□ -1.3
VPS13C-208ENST00000559119 C2orf78A6NCI8 922 aa6.93□□□□□ -1.3
VPS13C-208ENST00000559119 PEX11BO96011 259 aa6.93□□□□□ -1.3
VPS13C-208ENST00000559119 TTC38Q5R3I4 469 aa6.93□□□□□ -1.3
VPS13C-208ENST00000559119 FAM111BQ6SJ93 734 aa6.93□□□□□ -1.3
VPS13C-208ENST00000559119 PMFBP1Q8TBY8 1022 aa6.93□□□□□ -1.3
VPS13C-208ENST00000559119 SAMD15Q9P1V8 674 aa6.93□□□□□ -1.3
VPS13C-208ENST00000559119 PLD2O14939 933 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 IGFALSP35858 605 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 MAN2A2P49641 1150 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 SCNN1GP51170 649 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 MECP2P51608 486 aaKnown RBP6.92□□□□□ -1.3
VPS13C-208ENST00000559119 ANTXR2P58335 489 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 ZNF174Q15697 407 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 ELAVL1Q15717 326 aaKnown RBP6.92□□□□□ -1.3
VPS13C-208ENST00000559119 PRAMEF9Q5VWM5 478 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 KRT40Q6A162 431 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 ZCCHC8Q6NZY4 707 aaKnown RBP6.92□□□□□ -1.3
VPS13C-208ENST00000559119 Q6ZRM9 215 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 MRGPRGQ86SM5 289 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 LDLRAD3Q86YD5 345 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 CHST14Q8NCH0 376 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 GPHA2Q96T91 129 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 TCF25Q9BQ70 676 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 CABP5Q9NP86 173 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 KCMF1Q9P0J7 381 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 RCAN3Q9UKA8 241 aa6.92□□□□□ -1.3
VPS13C-208ENST00000559119 UBE2QL1A1L167 161 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 H7C1D1 291 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 GLRX3O76003 335 aaKnown RBP6.91□□□□□ -1.3
VPS13C-208ENST00000559119 RAPGEF3O95398 923 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 RANGAP1P46060 587 aaPredicted RBP6.91□□□□□ -1.3
VPS13C-208ENST00000559119 GAGE13Q4V321 117 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 DYDC2Q96IM9 177 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 WDR92Q96MX6 357 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 TUBGCP5Q96RT8 1024 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 PRRX2Q99811 253 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 IL23AQ9NPF7 189 aa6.91□□□□□ -1.3
VPS13C-208ENST00000559119 PTPDC1A2A3K4 754 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 DVL2O14641 736 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 DAPK3O43293 454 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 OPA1O60313 960 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 CYP17A1P05093 508 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 ZNF627Q7L945 461 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 NME9Q86XW9 330 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 PLA2G15Q8NCC3 412 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 RPGRQ92834 1020 aaKnown RBP6.9□□□□□ -1.3
VPS13C-208ENST00000559119 NKD2Q969F2 451 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-208ENST00000559119 GPR87Q9BY21 358 aa6.9□□□□□ -1.3
VPS13C-208ENST00000559119 POLR3BQ9NW08 1133 aaPredicted RBP6.9□□□□□ -1.3
VPS13C-208ENST00000559119 RAMP2O60895 175 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 ASLP04424 464 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 ADAM8P78325 824 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 SMAD3P84022 425 aaKnown RBP6.89□□□□□ -1.31
VPS13C-208ENST00000559119 FNDC3BQ53EP0 1204 aaKnown RBP6.89□□□□□ -1.31
VPS13C-208ENST00000559119 FKBP15Q5T1M5 1219 aa6.89□□□□□ -1.31
VPS13C-208ENST00000559119 LILRB2Q8N423 598 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms