RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 IGFALSP35858 605 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 PLA2G5P39877 138 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 DGKGP49619 791 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 PPP2R2AP63151 447 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 GABPAQ06546 454 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 TRAF1Q13077 416 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 TRIM29Q14134 588 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 RAB3GAP1Q15042 981 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 CERKLQ49MI3 558 aaPredicted RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 C6orf118Q5T5N4 469 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 SYDE2Q5VT97 1194 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 ATL3Q6DD88 541 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 RCSD1Q6JBY9 416 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 NSMFQ6X4W1 530 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 UBE2R2Q712K3 238 aaPredicted RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 CYB5R4Q7L1T6 521 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 STRA8Q7Z7C7 330 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 APOBEC3FQ8IUX4 373 aaKnown RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 FANCBQ8NB91 859 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 OR2W6PQ8NHA6 318 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 SMARCC2Q8TAQ2 1214 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 SLC7A3Q8WY07 619 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 ELMO3Q96BJ8 720 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 GMCL1Q96IK5 515 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 PRMT6Q96LA8 375 aaPredicted RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 MXD3Q9BW11 206 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 GBP3Q9H0R5 595 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 NUCKS1Q9H1E3 243 aaKnown RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 ZSCAN16Q9H4T2 348 aaPredicted RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 TDRD3Q9H7E2 651 aaKnown RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 LY9Q9HBG7 655 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 LUC7LQ9NQ29 371 aaKnown RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 ZNF70Q9UC06 446 aaPredicted RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 CNOT7Q9UIV1 285 aaKnown RBP5.84□□□□□ -1.47
LDLR-209ENST00000558528 PCDHB10Q9UN67 800 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 LRRC37AA6NMS7 1700 aa5.84□□□□□ -1.47
LDLR-209ENST00000558528 NEDD4P46934 1319 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 COL4A1P02462 1669 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 LAMA2P24043 3122 aaKnown RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 FAM155AB1AL88 458 aaPredicted RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 WNT10BO00744 389 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 STX6O43752 255 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 OPA1O60313 960 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 ABLIM3O94929 683 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 DEXIO95424 95 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 TTLL1O95922 423 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 TOP1P11387 765 aaKnown RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 PABPC1P11940 636 aaKnown RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 IFNAR1P17181 557 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 DDIT3P35638 169 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 PLCD1P51178 756 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 YARSP54577 528 aaKnown RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 ANTXR2P58335 489 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 SCRN1Q12765 414 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 STK3Q13188 491 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 SAFBQ15424 915 aaKnown RBP eCLIP5.83□□□□□ -1.48
LDLR-209ENST00000558528 SEC23AQ15436 765 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 SKOR2Q2VWA4 1001 aaPredicted RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 SUPT20HL1Q3ZLR7 823 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 DCAF15Q66K64 600 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 PKN3Q6P5Z2 889 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 FBXO46Q6PJ61 603 aaPredicted RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 APOA5Q6Q788 366 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 CLEC17AQ6ZS10 378 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 TMEM179Q6ZVK1 233 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 CHST3Q7LGC8 479 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 PLPPR2Q96GM1 343 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 ZBED3Q96IU2 234 aaPredicted RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 TCEANC2Q96MN5 208 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 ARPC5LQ9BPX5 153 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 SENP7Q9BQF6 1050 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 YIPF4Q9BSR8 244 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 LRRC2Q9BYS8 371 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 SH2D4AQ9H788 454 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 FBRSQ9HAH7 460 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 TRIM39Q9HCM9 518 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 ENAMQ9NRM1 1142 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 NYAP2Q9P242 653 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 SUCOQ9UBS9 1254 aaKnown RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 SAP30BPQ9UHR5 308 aaKnown RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 ATXN7L1Q9ULK2 861 aaPredicted RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 PHF24Q9UPV7 400 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 TAF6LQ9Y6J9 622 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 ANKRD31Q8N7Z5 1873 aa5.83□□□□□ -1.48
LDLR-209ENST00000558528 COL2A1P02458 1487 aaPredicted RBP5.83□□□□□ -1.48
LDLR-209ENST00000558528 NID2Q14112 1375 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 ATRNL1Q5VV63 1379 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 AKAP11Q9UKA4 1901 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 STK36Q9NRP7 1315 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 TCP10L2B9ZVM9 353 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 H0YGN5 161 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 J3QW42 95 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 GDF9O60383 454 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 PRDM1O75626 825 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 CELF2O95319 508 aaKnown RBP5.82□□□□□ -1.48
LDLR-209ENST00000558528 NAT1P18440 290 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 SYT1P21579 422 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 NOVP48745 357 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 ARL4DP49703 201 aa5.82□□□□□ -1.48
LDLR-209ENST00000558528 GMPSP49915 693 aaPredicted RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms