RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CCDC188H7C350 402 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 GH1P01241 217 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 SARNPP82979 210 aaKnown RBP12.25□□□□□ -0.45
LDLR-208ENST00000558518 LACTBP83111 547 aaPredicted RBP12.25□□□□□ -0.45
LDLR-208ENST00000558518 TCP10Q12799 353 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 CALCOCO2Q13137 446 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 CTTNQ14247 550 aaKnown RBP12.25□□□□□ -0.45
LDLR-208ENST00000558518 KIAA1755Q5JYT7 1200 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 NT5DC3Q86UY8 548 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 ARHGEF2Q92974 986 aaKnown RBP12.25□□□□□ -0.45
LDLR-208ENST00000558518 REEP2Q9BRK0 252 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 USP40Q9NVE5 1235 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 CAMTA1Q9Y6Y1 1673 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 SPAG7O75391 227 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 NR3C1P04150 777 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 DLATP10515 647 aaKnown RBP12.25□□□□□ -0.45
LDLR-208ENST00000558518 SSTR3P32745 418 aaPredicted RBP12.25□□□□□ -0.45
LDLR-208ENST00000558518 NFIXQ14938 502 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 RFX8Q6ZV50 586 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 SYCE1Q8N0S2 351 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 TMEM237Q96Q45 408 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 ERP44Q9BS26 406 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 GANQ9H2C0 597 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 ZNF287Q9HBT7 754 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 ETNK1Q9HBU6 452 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 DNM3Q9UQ16 869 aa12.25□□□□□ -0.45
LDLR-208ENST00000558518 TCRBV7S2A1N4TA0A589 114 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 WDR91A4D1P6 747 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 FAM13AO94988 1023 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 CALCAP01258 141 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 YY1P25490 414 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 SCNN1DP51172 638 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 ATP11AP98196 1134 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 EAPPQ56P03 285 aaPredicted RBP12.24□□□□□ -0.45
LDLR-208ENST00000558518 ERMARDQ5T6L9 678 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 CCDC137Q6PK04 289 aaKnown RBP12.24□□□□□ -0.45
LDLR-208ENST00000558518 ALG3Q92685 438 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 INTUQ9ULD6 942 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 TAF1P21675 1872 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 TMEM120BA0PK00 339 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 PIAS1O75925 651 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 KRT16P08779 473 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 AKR1B1P15121 316 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 CYP11B2P19099 503 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 CACNB3P54284 484 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 DRP2Q13474 957 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 AGBL2Q5U5Z8 902 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 CAPRIN2Q6IMN6 1127 aaKnown RBP12.24□□□□□ -0.45
LDLR-208ENST00000558518 ADGRF4Q8IZF3 695 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 ATG4AQ8WYN0 398 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 HOOK2Q96ED9 719 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 HEMGNQ9BXL5 484 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 BCL9LQ86UU0 1499 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 RPL21P46778 160 aaKnown RBP12.24□□□□□ -0.45
LDLR-208ENST00000558518 MRPL12P52815 198 aaKnown RBP12.24□□□□□ -0.45
LDLR-208ENST00000558518 PLCB4Q15147 1175 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 KIAA0825Q8IV33 1275 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 PROM2Q8N271 834 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 ACTRT1Q8TDG2 376 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 SLC20A1Q8WUM9 679 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 HAS1Q92839 578 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 MTMR9Q96QG7 549 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 CNOT10Q9H9A5 744 aaKnown RBP12.24□□□□□ -0.45
LDLR-208ENST00000558518 ARHGEF10LQ9HCE6 1279 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 NOP53Q9NZM5 478 aaKnown RBP12.24□□□□□ -0.45
LDLR-208ENST00000558518 PCDHA1Q9Y5I3 950 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 MYH1P12882 1939 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 MYH4Q9Y623 1939 aa12.24□□□□□ -0.45
LDLR-208ENST00000558518 ANKRD63C9JTQ0 380 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 TOM1O60784 492 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 GNA14O95837 355 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 NEFHP12036 1026 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 DDB1Q16531 1140 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 KYNUQ16719 465 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 MFSD14BQ5SR56 506 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 SEL1L2Q5TEA6 688 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 FBXO33Q7Z6M2 555 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 PRUNE1Q86TP1 453 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 FAM186BQ8IYM0 893 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 DISP2A7MBM2 1401 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 EME2A4GXA9 379 aaPredicted RBP12.23□□□□□ -0.45
LDLR-208ENST00000558518 EXOC3O60645 756 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 KNOP1Q1ED39 458 aaKnown RBP12.23□□□□□ -0.45
LDLR-208ENST00000558518 RBM26Q5T8P6 1007 aaKnown RBP12.23□□□□□ -0.45
LDLR-208ENST00000558518 DAB2IPQ5VWQ8 1189 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 INTS8Q75QN2 995 aaKnown RBP12.23□□□□□ -0.45
LDLR-208ENST00000558518 PABPC3Q9H361 631 aaKnown RBP12.23□□□□□ -0.45
LDLR-208ENST00000558518 AIPL1Q9NZN9 384 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 LRP6O75581 1613 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 SUN1O94901 812 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 PSMD2Q13200 908 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 LRRC57Q8N9N7 239 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 CYP2W1Q8TAV3 490 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 LNX1Q8TBB1 728 aaPredicted RBP12.23□□□□□ -0.45
LDLR-208ENST00000558518 C9orf72Q96LT7 481 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 RUSC1Q9BVN2 902 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 ZCWPW1Q9H0M4 648 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 SLITRK6Q9H5Y7 841 aa12.23□□□□□ -0.45
LDLR-208ENST00000558518 UBE2TQ9NPD8 197 aaPredicted RBP12.23□□□□□ -0.45
LDLR-208ENST00000558518 ALG6Q9Y672 507 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms