RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 CCDC183Q5T5S1 534 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 FAM102BQ5T8I3 360 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 GDF6Q6KF10 455 aaPredicted RBP10.66□□□□□ -0.7
CUX1-216ENST00000558469 EFCAB12Q6NXP0 572 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 LRRC71Q8N4P6 559 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 RETREG2Q8NC44 543 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 MCPH1Q8NEM0 835 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 TMEM143Q96AN5 459 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 DNAJC19Q96DA6 116 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 JPH2Q9BR39 696 aaPredicted RBP10.66□□□□□ -0.7
CUX1-216ENST00000558469 REEP2Q9BRK0 252 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 ZHX3Q9H4I2 956 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 GPRC5CQ9NQ84 441 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 XPNPEP1Q9NQW7 623 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 PCDHB8Q9UN66 801 aa10.66□□□□□ -0.7
CUX1-216ENST00000558469 SIP14410 1827 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 ALPK3Q96L96 1907 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 IGKV6-21A0A0C4DH24 114 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 MBLAC1A4D2B0 266 aaPredicted RBP10.65□□□□□ -0.7
CUX1-216ENST00000558469 TTLL13PA6NNM8 815 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 RSPH10B2B2RC85 870 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 ARVCFO00192 962 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 TREHO43280 583 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 TBCAO75347 108 aaKnown RBP10.65□□□□□ -0.7
CUX1-216ENST00000558469 SMC2O95347 1197 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 RPN1P04843 607 aaKnown RBP10.65□□□□□ -0.7
CUX1-216ENST00000558469 RSPH10BP0C881 870 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 CYP2C9P11712 490 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 EN2P19622 333 aaPredicted RBP10.65□□□□□ -0.7
CUX1-216ENST00000558469 DNM2P50570 870 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 CLCN3P51790 818 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 ADAM17P78536 824 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 PTPN11Q06124 597 aaPredicted RBP10.65□□□□□ -0.7
CUX1-216ENST00000558469 PTGISQ16647 500 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 CNNM4Q6P4Q7 775 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 RUFY4Q6ZNE9 571 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 SESTD1Q86VW0 696 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 SLC43A3Q8NBI5 491 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 TCP11Q8WWU5 503 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 SMARCE1Q969G3 411 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 PAWRQ96IZ0 340 aaKnown RBP10.65□□□□□ -0.7
CUX1-216ENST00000558469 DRC1Q96MC2 740 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 TIPINQ9BVW5 301 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 POLR3FQ9H1D9 316 aaPredicted RBP10.65□□□□□ -0.7
CUX1-216ENST00000558469 C11orf49Q9H6J7 331 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 PANK4Q9NVE7 773 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 KIAA1468Q9P260 1216 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 ODF2LQ9ULJ1 636 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 PCDHA5Q9Y5H7 936 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 PCDHA2Q9Y5H9 948 aa10.65□□□□□ -0.7
CUX1-216ENST00000558469 PVALEFA0A1B0GWK0 134 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 GAS2O43903 313 aaKnown RBP10.64□□□□□ -0.71
CUX1-216ENST00000558469 KLRC4O43908 158 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 FAM13AO94988 1023 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 CHRM1P11229 460 aaPredicted RBP10.64□□□□□ -0.71
CUX1-216ENST00000558469 COL6A1P12109 1028 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 TMOD1P28289 359 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 CDK7P50613 346 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 MAPK7Q13164 816 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 DRP2Q13474 957 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 KMT5BQ4FZB7 885 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 IER5Q5VY09 327 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 SLC39A5Q6ZMH5 540 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 UNC13DQ70J99 1090 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 CCDC65Q8IXS2 484 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 DAW1Q8N136 415 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 MYCT1Q8N699 235 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 LINC01465Q8N7H1 131 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 PRPF31Q8WWY3 499 aaKnown RBP10.64□□□□□ -0.71
CUX1-216ENST00000558469 KIFAP3Q92845 792 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 ABHD8Q96I13 439 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 SEZ6LQ9BYH1 1024 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 FAM49AQ9H0Q0 323 aaPredicted RBP10.64□□□□□ -0.71
CUX1-216ENST00000558469 TRPV6Q9H1D0 765 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 TRMT13Q9NUP7 481 aaKnown RBP10.64□□□□□ -0.71
CUX1-216ENST00000558469 SUCLA2Q9P2R7 463 aaPredicted RBP10.64□□□□□ -0.71
CUX1-216ENST00000558469 AKT3Q9Y243 479 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 COL4A3BPQ9Y5P4 624 aa10.64□□□□□ -0.71
CUX1-216ENST00000558469 SMIM35A0A1B0GVV1 85 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 BIN1O00499 593 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 B4GALT4O60513 344 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 VTNP04004 478 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 GAP43P17677 238 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 ARL2P36404 184 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 SARSP49591 514 aaKnown RBP10.63□□□□□ -0.71
CUX1-216ENST00000558469 COASYQ13057 564 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 HERC4Q5GLZ8 1057 aaPredicted RBP10.63□□□□□ -0.71
CUX1-216ENST00000558469 ODR4Q5SWX8 454 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 ISM2Q6H9L7 571 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 NECAB2Q7Z6G3 386 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 SERINC5Q86VE9 423 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 SFR1Q86XK3 245 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 RHPN2Q8IUC4 686 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 KSR1Q8IVT5 923 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 KIAA0319LQ8IZA0 1049 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 SPATA20Q8TB22 786 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 ASAP3Q8TDY4 903 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 DNAJB3Q8WWF6 145 aa10.63□□□□□ -0.71
CUX1-216ENST00000558469 PSPC1Q8WXF1 523 aaKnown RBP10.63□□□□□ -0.71
CUX1-216ENST00000558469 SLC39A7Q92504 469 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms