RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 CXorf56Q9H5V9 222 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 CCDC134Q9H6E4 229 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 ZDHHC18Q9NUE0 388 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 PFASO15067 1338 aa17.65■□□□□ 0.42
SHMT2-231ENST00000557433 PODXLO00592 558 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 ARHGAP4P98171 946 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 PABPC4Q13310 644 aaKnown RBP eCLIP17.64■□□□□ 0.428e-7■■■■■ 32.8
SHMT2-231ENST00000557433 DENND2CQ68D51 928 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 BTNL9Q6UXG8 535 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 STXBP4Q6ZWJ1 553 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 COL23A1Q86Y22 540 aaPredicted RBP17.64■□□□□ 0.42
SHMT2-231ENST00000557433 CCDC24Q8N4L8 307 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 LNX1Q8TBB1 728 aaPredicted RBP17.64■□□□□ 0.42
SHMT2-231ENST00000557433 GJA10Q969M2 543 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 SYT11Q9BT88 431 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 PCDHA1Q9Y5I3 950 aa17.64■□□□□ 0.42
SHMT2-231ENST00000557433 GREB1LQ9C091 1923 aaPredicted RBP17.64■□□□□ 0.42
SHMT2-231ENST00000557433 SYNGAP1Q96PV0 1343 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 ANKRD62A6NC57 917 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 AGTP01019 485 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 HLA-DOAP06340 250 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 CHRNA3P32297 505 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 CIITAP33076 1130 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 MMP13P45452 471 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 PMS2P54278 862 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 ADCY2Q08462 1091 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 PPP2R5AQ15172 486 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 QRICH1Q2TAL8 776 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 C6orf118Q5T5N4 469 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 FAM186BQ8IYM0 893 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 GIMAP7Q8NHV1 300 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 MORC4Q8TE76 937 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 ARHGEF1Q92888 912 aaKnown RBP17.64■□□□□ 0.41
SHMT2-231ENST00000557433 DPH5Q9H2P9 285 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 SEL1LQ9UBV2 794 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 ATP8A1Q9Y2Q0 1164 aa17.64■□□□□ 0.41
SHMT2-231ENST00000557433 DNM1LO00429 736 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 BBOX1O75936 387 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 GCNT3O95395 438 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 RFC4P35249 363 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 STAT3P40763 770 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 EIF6P56537 245 aaKnown RBP17.63■□□□□ 0.41
SHMT2-231ENST00000557433 CRY2Q49AN0 593 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 KIAA1755Q5JYT7 1200 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 C11orf63Q6NUN7 778 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 MKL1Q969V6 931 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 HVCN1Q96D96 273 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 CELF4Q9BZC1 486 aaKnown RBP17.63■□□□□ 0.41
SHMT2-231ENST00000557433 MTRF1LQ9UGC7 380 aaKnown RBP17.63■□□□□ 0.41
SHMT2-231ENST00000557433 FRMPD4Q14CM0 1322 aa17.63■□□□□ 0.41
SHMT2-231ENST00000557433 CCT8L1PA6NM43 557 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L15C9J2P7 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L13C9JLJ4 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L11C9JVI0 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L18D6R9N7 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L22D6RA61 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L17D6RBQ6 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L19D6RCP7 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L20D6RJB6 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 CTNND1O60716 968 aaKnown RBP17.62■□□□□ 0.41
SHMT2-231ENST00000557433 SHMT1P34896 483 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 SREBF1P36956 1147 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 KLRC3Q07444 240 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L24Q0WX57 530 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 MAPK7Q13164 816 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 USP17L6PQ6QN14 398 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 OLIG1Q8TAK6 271 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 RBM17Q96I25 401 aaKnown RBP17.62■□□□□ 0.41
SHMT2-231ENST00000557433 ZNF317Q96PQ6 595 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-231ENST00000557433 NSRP1Q9H0G5 558 aaKnown RBP17.62■□□□□ 0.41
SHMT2-231ENST00000557433 MCM8Q9UJA3 840 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 PHF2O75151 1096 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 EZRP15311 586 aaKnown RBP17.62■□□□□ 0.41
SHMT2-231ENST00000557433 MUTP22033 750 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 SLC16A2P36021 539 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 FMO5P49326 533 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 MMP14P50281 582 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 SLMAPQ14BN4 828 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 PRR16Q569H4 304 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 UBL4BQ8N7F7 174 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 PCYOX1Q9UHG3 505 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 DNAJC12Q9UKB3 198 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 AJAP1Q9UKB5 411 aaPredicted RBP17.62■□□□□ 0.41
SHMT2-231ENST00000557433 RABGAP1Q9Y3P9 1069 aa17.62■□□□□ 0.41
SHMT2-231ENST00000557433 MEIS2O14770 477 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 KIF1CO43896 1103 aaKnown RBP17.61■□□□□ 0.41
SHMT2-231ENST00000557433 MGRN1O60291 552 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 TNFAIP3P21580 790 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 CASP4P49662 377 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 PSMC6P62333 389 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 PICALMQ13492 652 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 MYBPC2Q14324 1141 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 KIF22Q14807 665 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 DRAP1Q14919 205 aaPredicted RBP17.61■□□□□ 0.41
SHMT2-231ENST00000557433 KCTD1Q719H9 257 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 PIGWQ7Z7B1 504 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 JAMLQ86YT9 394 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 GLYCTKQ8IVS8 523 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 GPATCH11Q8N954 259 aa17.61■□□□□ 0.41
SHMT2-231ENST00000557433 GPR101Q96P66 508 aaPredicted RBP17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms