RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 DGAT1O75907 488 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 AFPP02771 609 aaKnown RBP13.85□□□□□ -0.19
SHMT2-229ENST00000557348 CCNA1P78396 465 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 PPP2R5AQ15172 486 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 RAD9BQ6WBX8 426 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 ZNF662Q6ZS27 426 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 TOGARAM2Q6ZUX3 1019 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 CACNA2D4Q7Z3S7 1137 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 SYCP3Q8IZU3 236 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 EHBP1Q8NDI1 1231 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 CNKSR2Q8WXI2 1034 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 EEF2KMTQ96G04 330 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 FAM107BQ9H098 131 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 MMRN2Q9H8L6 949 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 MYO6Q9UM54 1294 aa13.85□□□□□ -0.19
SHMT2-229ENST00000557348 EPN1Q9Y6I3 576 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-229ENST00000557348 MAPK13O15264 365 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 KIF5CO60282 957 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 USO1O60763 962 aaKnown RBP13.84□□□□□ -0.19
SHMT2-229ENST00000557348 NDUFA10O95299 355 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 SUPT20HL2P0C7V6 817 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 CETPP11597 493 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 HOXD13P35453 343 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 GTF2A2P52657 109 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 ACTR2P61160 394 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 KCTD2Q14681 263 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 ZSCAN26Q16670 478 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 XKR3Q5GH77 459 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 CC2D1AQ6P1N0 951 aaPredicted RBP13.84□□□□□ -0.19
SHMT2-229ENST00000557348 ABHD15Q6UXT9 468 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 DAW1Q8N136 415 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 FAM133AQ8N9E0 248 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 SPIRE2Q8WWL2 714 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 PAGR1Q9BTK6 254 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 ACBD3Q9H3P7 528 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 PLCB1Q9NQ66 1216 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 IGSF9BQ9UPX0 1349 aa13.84□□□□□ -0.19
SHMT2-229ENST00000557348 ERICH4A6NGS2 130 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 ZBTB39O15060 712 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 TGFB1I1O43294 461 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 ERLIN1O75477 346 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 RGS20O76081 388 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 ATG7O95352 703 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 ERCC3P19447 782 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 NMT1P30419 496 aaKnown RBP13.83□□□□□ -0.2
SHMT2-229ENST00000557348 TNNT3P45378 269 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-229ENST00000557348 ERVK-24P63145 666 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 GTF2BQ00403 316 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 DMP1Q13316 513 aaPredicted RBP13.83□□□□□ -0.2
SHMT2-229ENST00000557348 SMC1AQ14683 1233 aaKnown RBP13.83□□□□□ -0.2
SHMT2-229ENST00000557348 TRIM65Q6PJ69 517 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 RSRC2Q7L4I2 434 aaKnown RBP13.83□□□□□ -0.2
SHMT2-229ENST00000557348 EXOC8Q8IYI6 725 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 LUC7LQ9NQ29 371 aaKnown RBP13.83□□□□□ -0.2
SHMT2-229ENST00000557348 GABBR1Q9UBS5 961 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 FBXL5Q9UKA1 691 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 ZMYM2Q9UBW7 1377 aa13.83□□□□□ -0.2
SHMT2-229ENST00000557348 SFI1A8K8P3 1242 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 BACH1O14867 736 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 N4BP1O75113 896 aaKnown RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 CNMDO75829 334 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 CASQ1P31415 396 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 ACTN2P35609 894 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 NCKAP1LP55160 1127 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 KCNH2Q12809 1159 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 MOGSQ13724 837 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 UGCGQ16739 394 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 FAM160B1Q5W0V3 765 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 LEKR1Q6ZMV7 388 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 FAM186BQ8IYM0 893 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 GOLGA1Q92805 767 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 KCNN1Q92952 543 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 PURBQ96QR8 312 aaKnown RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 TSGA10Q9BZW7 698 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 HAUS4Q9H6D7 363 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 AGPAT3Q9NRZ7 376 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 FAM207AQ9NSI2 230 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 DMAC2Q9NW81 257 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 CLEC11AQ9Y240 323 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 SSU72P8A0A1W2PR75 194 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 EIF3CLB5ME19 914 aaKnown RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 MAP2K7O14733 419 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 AKAP3O75969 853 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 TBC1D8O95759 1140 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 GCLCP48506 637 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 SPA17Q15506 151 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 SWSAP1Q6NVH7 229 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 GBP6Q6ZN66 633 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 INTS8Q75QN2 995 aaKnown RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 ZNF526Q8TF50 670 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 FAM167AQ96KS9 214 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 CEP170P1Q96L14 293 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 CCDC42Q96M95 316 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 MMP19Q99542 508 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 EIF3CQ99613 913 aaKnown RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 NTPCRQ9BSD7 190 aaKnown RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 ATP6V0A4Q9HBG4 840 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 GPBP1L1Q9HC44 474 aaPredicted RBP13.82□□□□□ -0.2
SHMT2-229ENST00000557348 AGPAT5Q9NUQ2 364 aa13.82□□□□□ -0.2
SHMT2-229ENST00000557348 ASB14A6NK59 587 aa13.81□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms