RNA–Protein interactions for RNA: ENST00000557342.5

SLIRP-209, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 1 (best) BASIC

Gene SLIRP, Length 408 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-209ENST00000557342 EMC2Q15006 297 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 PPP2R2DQ66LE6 453 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 RHPN2Q8IUC4 686 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 ZNF579Q8NAF0 562 aaKnown RBP13.92□□□□□ -0.18
SLIRP-209ENST00000557342 PIGOQ8TEQ8 1089 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 TMEM40Q8WWA1 233 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 PSPC1Q8WXF1 523 aaKnown RBP13.92□□□□□ -0.18
SLIRP-209ENST00000557342 FAM161BQ96MY7 647 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 INO80BQ9C086 356 aaPredicted RBP13.92□□□□□ -0.18
SLIRP-209ENST00000557342 TTYH1Q9H313 450 aaPredicted RBP13.92□□□□□ -0.18
SLIRP-209ENST00000557342 ATP6V0A4Q9HBG4 840 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 ST3GAL5Q9UNP4 418 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 INSL6Q9Y581 213 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 NLRC5Q86WI3 1866 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 LAMA3Q16787 3333 aa13.92□□□□□ -0.18
SLIRP-209ENST00000557342 RALGAPA2Q2PPJ7 1873 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 CA3P07451 260 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 DARSP14868 501 aaKnown RBP13.91□□□□□ -0.18
SLIRP-209ENST00000557342 MYOGP15173 224 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 RESTQ13127 1097 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 MXD4Q14582 209 aaPredicted RBP13.91□□□□□ -0.18
SLIRP-209ENST00000557342 FAM228AQ86W67 206 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 SNX29Q8TEQ0 813 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 TSPYL2Q9H2G4 693 aaPredicted RBP13.91□□□□□ -0.18
SLIRP-209ENST00000557342 C1orf112Q9NSG2 853 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 MTMR6Q9Y217 621 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 COL4A3BPQ9Y5P4 624 aa13.91□□□□□ -0.18
SLIRP-209ENST00000557342 A0A087WZ62 844 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 DENND3A2RUS2 1198 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 ARHGEF35A5YM69 484 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 VWA3AA6NCI4 1184 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 UPP2O95045 317 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 STAG3L1P0CL83 205 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 SFPQP23246 707 aaKnown RBP eCLIP13.9□□□□□ -0.18
SLIRP-209ENST00000557342 HTRA4P83105 476 aaPredicted RBP13.9□□□□□ -0.18
SLIRP-209ENST00000557342 SF3A1Q15459 793 aaKnown RBP13.9□□□□□ -0.18
SLIRP-209ENST00000557342 IL17AQ16552 155 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 FAM117BQ6P1L5 589 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 POTEGQ6S5H5 508 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 TMCO2Q7Z6W1 182 aaPredicted RBP13.9□□□□□ -0.18
SLIRP-209ENST00000557342 KCTD17Q8N5Z5 321 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 MCPH1Q8NEM0 835 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 TMEM143Q96AN5 459 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 AK8Q96MA6 479 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 NLRP4Q96MN2 994 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 YME1L1Q96TA2 773 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 FDXACB1Q9BRP7 624 aaPredicted RBP13.9□□□□□ -0.18
SLIRP-209ENST00000557342 TMX1Q9H3N1 280 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 BMP2KQ9NSY1 1161 aaPredicted RBP13.9□□□□□ -0.18
SLIRP-209ENST00000557342 COL4A6Q14031 1691 aa13.9□□□□□ -0.18
SLIRP-209ENST00000557342 MYH11P35749 1972 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 SLC26A4O43511 780 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 ZSCAN20P17040 1043 aaPredicted RBP13.89□□□□□ -0.19
SLIRP-209ENST00000557342 LAMTOR4Q0VGL1 99 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 TFDP1Q14186 410 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 SLC24A5Q71RS6 500 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 SRGAP1Q7Z6B7 1085 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 RTN4RL1Q86UN2 441 aaPredicted RBP13.89□□□□□ -0.19
SLIRP-209ENST00000557342 NPAS4Q8IUM7 802 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 PRPF31Q8WWY3 499 aaKnown RBP13.89□□□□□ -0.19
SLIRP-209ENST00000557342 LINC01599Q8WXQ3 324 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 ZNF668Q96K58 619 aaPredicted RBP13.89□□□□□ -0.19
SLIRP-209ENST00000557342 GUCD1Q96NT3 240 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 ADAM2Q99965 735 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 NT5C3AQ9H0P0 336 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 XPNPEP1Q9NQW7 623 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 RGS18Q9NS28 235 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 DDX19AQ9NUU7 478 aaKnown RBP13.89□□□□□ -0.19
SLIRP-209ENST00000557342 LRFN2Q9ULH4 789 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 KIAA1024Q9UPX6 916 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 DNM3Q9UQ16 869 aa13.89□□□□□ -0.19
SLIRP-209ENST00000557342 FNDC1Q4ZHG4 1894 aaPredicted RBP13.89□□□□□ -0.19
SLIRP-209ENST00000557342 A0A087WWV3 80 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 USO1O60763 962 aaKnown RBP13.88□□□□□ -0.19
SLIRP-209ENST00000557342 SRGAP2CP0DJJ0 459 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 LONP1P36776 959 aaKnown RBP13.88□□□□□ -0.19
SLIRP-209ENST00000557342 SARSP49591 514 aaKnown RBP13.88□□□□□ -0.19
SLIRP-209ENST00000557342 TAP1Q03518 808 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 POU5F1BQ06416 359 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 GRIN2CQ14957 1233 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 KSR1Q8IVT5 923 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 SP7Q8TDD2 431 aaPredicted RBP13.88□□□□□ -0.19
SLIRP-209ENST00000557342 CDK5RAP3Q96JB5 506 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 CDX2Q99626 313 aaPredicted RBP13.88□□□□□ -0.19
SLIRP-209ENST00000557342 IFT122Q9HBG6 1241 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 CHST12Q9NRB3 414 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 DACT1Q9NYF0 836 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 STXBP5LQ9Y2K9 1186 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 PCDHB7Q9Y5E2 793 aa13.88□□□□□ -0.19
SLIRP-209ENST00000557342 LCHNA4D1U4 455 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 PP2D1A8MPX8 630 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 RBAK-RBAKDNI3L0D1 243 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 EYA4O95677 639 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 CYP11B2P19099 503 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 CDC25AP30304 524 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 ARL2P36404 184 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 PHKA2P46019 1235 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 DSC3Q14574 896 aa13.87□□□□□ -0.19
SLIRP-209ENST00000557342 PCBP1Q15365 356 aaKnown RBP eCLIP13.87□□□□□ -0.19
SLIRP-209ENST00000557342 ECM1Q16610 540 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms