RNA–Protein interactions for RNA: ENST00000556973.1

LINC00239-201, long intergenic non-protein coding RNA 239, humanhuman

TSL 3 BASIC

Gene LINC00239, Length 639 nt, Biotype lincRNA, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00239-201ENST00000556973 NLRP7Q8WX94 980 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 PSPC1Q8WXF1 523 aaKnown RBP11.91□□□□□ -0.5
LINC00239-201ENST00000556973 PPP1R16BQ96T49 567 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 RAD9AQ99638 391 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 GCOM2Q9BZD3 368 aaPredicted RBP11.91□□□□□ -0.5
LINC00239-201ENST00000556973 ZNF576Q9H609 170 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 KIAA1024Q9UPX6 916 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 INSL6Q9Y581 213 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 MYH15Q9Y2K3 1946 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 TRIOBPQ9H2D6 2365 aa11.91□□□□□ -0.5
LINC00239-201ENST00000556973 A0A087WZ62 844 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 VWA3AA6NCI4 1184 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 DARSP14868 501 aaKnown RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 MYOGP15173 224 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 MXD4Q14582 209 aaPredicted RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 EMC2Q15006 297 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 ECM1Q16610 540 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 POTEGQ6S5H5 508 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 Q7L0L9 218 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 TMCO2Q7Z6W1 182 aaPredicted RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 FAM228AQ86W67 206 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 KSR1Q8IVT5 923 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 SPRYD3Q8NCJ5 442 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 PRPF31Q8WWY3 499 aaKnown RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 TMEM143Q96AN5 459 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 AK8Q96MA6 479 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 SCLT1Q96NL6 688 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 FDXACB1Q9BRP7 624 aaPredicted RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 NKX2-4Q9H2Z4 354 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 TTYH1Q9H313 450 aaPredicted RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 ATP6V0A4Q9HBG4 840 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 RGS18Q9NS28 235 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 RNF216Q9NWF9 866 aaPredicted RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 MTMR10Q9NXD2 777 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 DNM3Q9UQ16 869 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 YBX2Q9Y2T7 364 aaKnown RBP11.9□□□□□ -0.5
LINC00239-201ENST00000556973 COL4A3BPQ9Y5P4 624 aa11.9□□□□□ -0.5
LINC00239-201ENST00000556973 ARHGEF35A5YM69 484 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 PP2D1A8MPX8 630 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 RBAK-RBAKDNI3L0D1 243 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 SLC26A4O43511 780 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 UPP2O95045 317 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 ZSCAN20P17040 1043 aaPredicted RBP11.89□□□□□ -0.51
LINC00239-201ENST00000556973 CDC25AP30304 524 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 LONP1P36776 959 aaKnown RBP11.89□□□□□ -0.51
LINC00239-201ENST00000556973 LAMTOR4Q0VGL1 99 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 HYIQ5T013 277 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 FAM173BQ6P4H8 233 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 MCPH1Q8NEM0 835 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 ZNF668Q96K58 619 aaPredicted RBP11.89□□□□□ -0.51
LINC00239-201ENST00000556973 NLRP4Q96MN2 994 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 MMTAG2Q9BU76 263 aaKnown RBP11.89□□□□□ -0.51
LINC00239-201ENST00000556973 TSPYL2Q9H2G4 693 aaPredicted RBP11.89□□□□□ -0.51
LINC00239-201ENST00000556973 TMX1Q9H3N1 280 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 IFT122Q9HBG6 1241 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 C1orf112Q9NSG2 853 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 DDX19AQ9NUU7 478 aaKnown RBP11.89□□□□□ -0.51
LINC00239-201ENST00000556973 CLIC4Q9Y696 253 aa11.89□□□□□ -0.51
LINC00239-201ENST00000556973 SZT2Q5T011 3432 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 DENND3A2RUS2 1198 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 EYA4O95677 639 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 CA3P07451 260 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 STAG3L1P0CL83 205 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 SRGAP2CP0DJJ0 459 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 ZSCAN22P10073 491 aaPredicted RBP11.88□□□□□ -0.51
LINC00239-201ENST00000556973 CYP11B2P19099 503 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 ARL2P36404 184 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 HTRA4P83105 476 aaPredicted RBP11.88□□□□□ -0.51
LINC00239-201ENST00000556973 POU5F1BQ06416 359 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 TFDP1Q14186 410 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 BECN1Q14457 450 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 PTPAQ15257 358 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 FAM117BQ6P1L5 589 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 PADI6Q6TGC4 694 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 SLC24A5Q71RS6 500 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 SRGAP1Q7Z6B7 1085 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 FAM161BQ96MY7 647 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 ADAM2Q99965 735 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 NT5C3AQ9H0P0 336 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 BHMT2Q9H2M3 363 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 XPNPEP1Q9NQW7 623 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 CHST12Q9NRB3 414 aa11.88□□□□□ -0.51
LINC00239-201ENST00000556973 BMP2KQ9NSY1 1161 aaPredicted RBP11.88□□□□□ -0.51
LINC00239-201ENST00000556973 MORC2Q9Y6X9 1032 aaPredicted RBP11.88□□□□□ -0.51
LINC00239-201ENST00000556973 TTC3P53804 2025 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 E9PMD0 336 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 MGEA5O60502 916 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 USO1O60763 962 aaKnown RBP11.87□□□□□ -0.51
LINC00239-201ENST00000556973 DGKIO75912 1065 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 SFPQP23246 707 aaKnown RBP eCLIP11.87□□□□□ -0.51
LINC00239-201ENST00000556973 UBA7P41226 1012 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 SARSP49591 514 aaKnown RBP11.87□□□□□ -0.51
LINC00239-201ENST00000556973 FAM189BP81408 668 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 DSC3Q14574 896 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 SLC39A14Q15043 492 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 PPP2R2DQ66LE6 453 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 CABP7Q86V35 215 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 NPAS4Q8IUM7 802 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 CRIPAKQ8N1N5 446 aa11.87□□□□□ -0.51
LINC00239-201ENST00000556973 RNF149Q8NC42 400 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms