RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 PAK2Q13177 524 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 GRB10Q13322 594 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 PLEKHG4Q58EX7 1191 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 HABP4Q5JVS0 413 aaKnown RBP12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 ATL3Q6DD88 541 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 TSHZ1Q6ZSZ6 1077 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 KSR1Q8IVT5 923 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 USP38Q8NB14 1042 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 EPSTI1Q96J88 318 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 PNMA5Q96PV4 448 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 CCDC39Q9UFE4 941 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 COL4A3BPQ9Y5P4 624 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 SLC4A7Q9Y6M7 1214 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 TET1Q8NFU7 2136 aa12.74□□□□□ -0.37
CCDC88C-212ENST00000556767 A0A087WZ62 844 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 ABHD14A-ACY1A0A1B0GW23 586 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 PPP6R2O75170 966 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 BAIAP3O94812 1187 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 EYA4O95677 639 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 SRGAP2CP0DJJ0 459 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 ME1P48163 572 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 KRT85P78386 507 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 DHX8Q14562 1220 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 KARSQ15046 597 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 TCTN1Q2MV58 587 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 ODR4Q5SWX8 454 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 FAM102BQ5T8I3 360 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 ZNF710Q8N1W2 664 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 MCPH1Q8NEM0 835 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 TMEM40Q8WWA1 233 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 PRPF31Q8WWY3 499 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 SYMPKQ92797 1274 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 APBB2Q92870 758 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 CHAMP1Q96JM3 812 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 FDXACB1Q9BRP7 624 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 GCOM2Q9BZD3 368 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 POLR3FQ9H1D9 316 aaPredicted RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 ADAMTS10Q9H324 1103 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 AGO3Q9H9G7 860 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 XPNPEP1Q9NQW7 623 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 PADI3Q9ULW8 664 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 NOC2LQ9Y3T9 749 aaKnown RBP12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 SQORQ9Y6N5 450 aa12.73□□□□□ -0.37
CCDC88C-212ENST00000556767 LOXHD1Q8IVV2 1947 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 SIP14410 1827 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 HSFX4A0A1B0GTS1 333 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 HSFX3A0A1B0GWH4 333 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 GPR182O15218 404 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 SLC26A4O43511 780 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 EFCAB14O75071 495 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 CYP11B2P19099 503 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 IBSPP21815 317 aaPredicted RBP12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 EIF4BP23588 611 aaKnown RBP12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 LAMTOR4Q0VGL1 99 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 TFDP1Q14186 410 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 TMEM119Q4V9L6 283 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 HYIQ5T013 277 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 USP49Q70CQ1 688 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 KCNK18Q7Z418 384 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 ZNF410Q86VK4 478 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 RNF149Q8NC42 400 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 KCNG4Q8TDN1 519 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 CCSER1Q9C0I3 900 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 GPRC5CQ9NQ84 441 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 ST3GAL5Q9UNP4 418 aa12.72□□□□□ -0.37
CCDC88C-212ENST00000556767 GRXCR1A8MXD5 290 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 ASAP2O43150 1006 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 CUTAO60888 179 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 CSDE1O75534 798 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 AMHP03971 560 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 PLA2G4BP0C869 781 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 DARSP14868 501 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 ATP2A2P16615 1042 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 PLCG1P19174 1290 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 FGFR4P22455 802 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 WDR5P61964 334 aaKnown RBP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 MXD4Q14582 209 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 TPRNQ4KMQ1 711 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 RASIP1Q5U651 963 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 RRAGBQ5VZM2 374 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 FAM117BQ6P1L5 589 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 FAM228AQ86W67 206 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 MYOCDQ8IZQ8 938 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 KCTD17Q8N5Z5 321 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 ASAP3Q8TDY4 903 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 SPATA32Q96LK8 384 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 SLC9A7Q96T83 725 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 PANK2Q9BZ23 570 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 INO80BQ9C086 356 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 POLD4Q9HCU8 107 aa12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 MORC2Q9Y6X9 1032 aaPredicted RBP12.71□□□□□ -0.37
CCDC88C-212ENST00000556767 LRRIQ4A6NIV6 560 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 UPP2O95045 317 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 KRT18P05783 430 aaKnown RBP12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 SFPQP23246 707 aaKnown RBP eCLIP12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 GLRA2P23416 452 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 ARL2P36404 184 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 PHKA2P46019 1235 aa12.7□□□□□ -0.38
CCDC88C-212ENST00000556767 DEFB103AP81534 67 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms