RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 DCAF4Q8WV16 495 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 MASTLQ96GX5 879 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 THAP2Q9H0W7 228 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 BZW2Q9Y6E2 419 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 SIPA1L3O60292 1781 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 N4BP2Q86UW6 1770 aaPredicted RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 CYP26A1O43174 497 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 FIGNQ5HY92 759 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 POP1Q99575 1024 aaKnown RBP13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 PLCD4Q9BRC7 762 aa13.15□□□□□ -0.3
CCDC88C-211ENST00000556726 FOXN3O00409 490 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 LMNB1P20700 586 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 FGFR4P22455 802 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 E2F5Q15329 346 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 TMEM119Q4V9L6 283 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 SLC20A1Q8WUM9 679 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.14□□□□□ -0.313e-6■■■■■ 30.2
CCDC88C-211ENST00000556726 PI4K2AQ9BTU6 479 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 FMO5P49326 533 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 SMTNP53814 917 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 ARHGEF16Q5VV41 709 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 CYP4F22Q6NT55 531 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 TADA2BQ86TJ2 420 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 LDHDQ86WU2 507 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 C1orf54Q8WWF1 131 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 FAM20AQ96MK3 541 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 VIPAS39Q9H9C1 493 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 MYH6P13533 1939 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 TJP1Q07157 1748 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 PHF20L1A8MW92 1017 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 MEIS2O14770 477 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 NOL4O94818 638 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 EYA4O95677 639 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 PRELPP51888 382 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 CEP55Q53EZ4 464 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 TTMPQ5BVD1 217 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 CYFIP1Q7L576 1253 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 COL23A1Q86Y22 540 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 SYT2Q8N9I0 419 aaPredicted RBP13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 KAT5Q92993 513 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 HAUS1Q96CS2 278 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 CRAMP1Q96RY5 1269 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 CBWD1Q9BRT8 395 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 FAM53CQ9NYF3 392 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 TAS2R14Q9NYV8 317 aa13.14□□□□□ -0.31
CCDC88C-211ENST00000556726 NUP98P52948 1817 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 PDXKO00764 312 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 ATF7P17544 494 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 MAGEA9P43362 315 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 ERVK-9P63128 1117 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 SF3B2Q13435 895 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 UAP1Q16222 522 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 HGSNATQ68CP4 663 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 PPP4R3CPQ6ZMV5 832 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 FRMD5Q7Z6J6 570 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 PBKQ96KB5 322 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 RAB17Q9H0T7 212 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 BAIAP2L1Q9UHR4 511 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 MYO1FO00160 1098 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 EIF3HO15372 352 aaKnown RBP eCLIP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 SOX5P35711 763 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 HDLBPQ00341 1268 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 GDAP1Q8TB36 358 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 WHAMMQ8TF30 809 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 CEP170P1Q96L14 293 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 PURBQ96QR8 312 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 GLIS2Q9BZE0 524 aaPredicted RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 KLHL11Q9NVR0 708 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 TMEM51Q9NW97 253 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 DUOX1Q9NRD9 1551 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 LRRIQ4A6NIV6 560 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 POLRMTO00411 1230 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 GAP43P17677 238 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 LSP1P33241 339 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 MUM1L1Q5H9M0 696 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 NLRX1Q86UT6 975 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 CDAN1Q8IWY9 1227 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 TPCN2Q8NHX9 752 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 AENQ8WTP8 325 aaKnown RBP13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 TBC1D31Q96DN5 1066 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 ATP6V1G3Q96LB4 118 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 FZD1Q9UP38 647 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 COL18A1P39060 1754 aa13.13□□□□□ -0.31
CCDC88C-211ENST00000556726 SLIT2O94813 1529 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 AGPSO00116 658 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 HSD17B3P37058 310 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 ADCY8P40145 1251 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 CBWD6Q4V339 395 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 FAM133BQ5BKY9 247 aaKnown RBP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 CBWD3Q5JTY5 395 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 CBWD5Q5RIA9 395 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 NAP1L3Q99457 506 aaPredicted RBP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 WDR11Q9BZH6 1224 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 PSD3Q9NYI0 1048 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 PNMA2Q9UL42 364 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 PPP1R9AQ9ULJ8 1098 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 GINS2Q9Y248 185 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 DDX3XO00571 662 aaKnown RBP eCLIP13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 POTEJP0CG39 1038 aa13.12□□□□□ -0.31
CCDC88C-211ENST00000556726 OSTNP61366 133 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms