RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 MTM1Q13496 603 aa16.07■□□□□ 0.16
CUX1-215ENST00000556210 UAP1Q16222 522 aaPredicted RBP16.07■□□□□ 0.16
CUX1-215ENST00000556210 USP37Q86T82 979 aa16.07■□□□□ 0.16
CUX1-215ENST00000556210 CDAN1Q8IWY9 1227 aa16.07■□□□□ 0.16
CUX1-215ENST00000556210 SUPT20HQ8NEM7 779 aa16.07■□□□□ 0.16
CUX1-215ENST00000556210 ZNF408Q9H9D4 720 aa16.07■□□□□ 0.16
CUX1-215ENST00000556210 SALL4Q9UJQ4 1053 aa16.07■□□□□ 0.16
CUX1-215ENST00000556210 BZW2Q9Y6E2 419 aaKnown RBP16.07■□□□□ 0.16
CUX1-215ENST00000556210 TARSL2A2RTX5 802 aaKnown RBP16.06■□□□□ 0.16
CUX1-215ENST00000556210 GAP43P17677 238 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 GBP2P32456 591 aaPredicted RBP16.06■□□□□ 0.16
CUX1-215ENST00000556210 STRN3Q13033 797 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 RASA3Q14644 834 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 PI4K2AQ9BTU6 479 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 LOC102724159A0A0B4J2E5 919 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 EYA4O95677 639 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 SEC24CP53992 1094 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 PWP2Q15269 919 aaKnown RBP16.06■□□□□ 0.16
CUX1-215ENST00000556210 DNAJC19Q96DA6 116 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 POP1Q99575 1024 aaKnown RBP16.06■□□□□ 0.16
CUX1-215ENST00000556210 PLVAPQ9BX97 442 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 FAM198AQ9UFP1 575 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 CYP26A1O43174 497 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 PON1P27169 355 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 KLHDC7AQ5VTJ3 777 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 RPUSD2Q8IZ73 545 aaKnown RBP16.06■□□□□ 0.16
CUX1-215ENST00000556210 BTBD6Q96KE9 485 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 TLR10Q9BXR5 811 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 SIK3Q9Y2K2 1263 aa16.06■□□□□ 0.16
CUX1-215ENST00000556210 KIF4AO95239 1232 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 FAM153BP0C7A2 387 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 EZRP15311 586 aaKnown RBP16.05■□□□□ 0.16
CUX1-215ENST00000556210 NR1D1P20393 614 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 LMNB1P20700 586 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 KCNJ1P48048 391 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 IGBP1P78318 339 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 NBPF9Q3BBW0 867 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 FAM153CQ494X1 144 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 DENND2CQ68D51 928 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 EMBQ6PCB8 327 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 ZBTB33Q86T24 672 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 METTL13Q8N6R0 699 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 INTS2Q9H0H0 1204 aaKnown RBP16.05■□□□□ 0.16
CUX1-215ENST00000556210 FAM153AQ9UHL3 310 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 NFIBO00712 420 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 CALCAP01258 141 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 POLGP54098 1239 aaPredicted RBP16.05■□□□□ 0.16
CUX1-215ENST00000556210 PAPD7Q5XG87 772 aaKnown RBP16.05■□□□□ 0.16
CUX1-215ENST00000556210 DCUN1D2Q6PH85 259 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 LRRC55Q6ZSA7 311 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 ZNF365Q70YC5 407 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 KIFAP3Q92845 792 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 HAUS1Q96CS2 278 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 ZIM3Q96PE6 472 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 FAM213AQ9BRX8 229 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 NAGPAQ9UK23 515 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 ACSL3O95573 720 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 ASNSP08243 561 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 ITGA4P13612 1032 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 CCDC38Q502W7 563 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 PPP4R3CPQ6ZMV5 832 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 SAMD7Q7Z3H4 446 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 SLC35G2Q8TBE7 412 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 ZHX2Q9Y6X8 837 aa16.05■□□□□ 0.16
CUX1-215ENST00000556210 DENND3A2RUS2 1198 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 MEIS2O14770 477 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 RGS16O15492 202 aaPredicted RBP16.04■□□□□ 0.16
CUX1-215ENST00000556210 PDE6CP51160 858 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 ALS2CLQ60I27 953 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 SWSAP1Q6NVH7 229 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 HAUS6Q7Z4H7 955 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 FLAD1Q8NFF5 587 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 THOC1Q96FV9 657 aaKnown RBP16.04■□□□□ 0.16
CUX1-215ENST00000556210 ACCSQ96QU6 501 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 CBWD1Q9BRT8 395 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 PDXKO00764 312 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 RNF207Q6ZRF8 634 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 CREG2Q8IUH2 290 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 TRIM59Q8IWR1 403 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 SYT2Q8N9I0 419 aaPredicted RBP16.04■□□□□ 0.16
CUX1-215ENST00000556210 DEPTORQ8TB45 409 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 PLCD4Q9BRC7 762 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 ZNF70Q9UC06 446 aaPredicted RBP16.04■□□□□ 0.16
CUX1-215ENST00000556210 CD2APQ9Y5K6 639 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 FMO5P49326 533 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 MTMR2Q13614 643 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 ZKSCAN8Q15776 578 aaPredicted RBP16.04■□□□□ 0.16
CUX1-215ENST00000556210 SEZ6Q53EL9 994 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 CYP4F22Q6NT55 531 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 RNF10Q8N5U6 811 aaKnown RBP16.04■□□□□ 0.16
CUX1-215ENST00000556210 NAP1L3Q99457 506 aaPredicted RBP16.04■□□□□ 0.16
CUX1-215ENST00000556210 GABBR1Q9UBS5 961 aa16.04■□□□□ 0.16
CUX1-215ENST00000556210 SSU72P8A0A1W2PR75 194 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 FOXN3O00409 490 aaPredicted RBP16.03■□□□□ 0.16
CUX1-215ENST00000556210 ADCY8P40145 1251 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 SCARA5Q6ZMJ2 495 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 RUFY4Q6ZNE9 571 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 ZDHHC15Q96MV8 337 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 KCNH7Q9NS40 1196 aa16.03■□□□□ 0.16
CUX1-215ENST00000556210 FBXL5Q9UKA1 691 aa16.03■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms