RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 CCDC24Q8N4L8 307 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 FAM133AQ8N9E0 248 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 RDM1Q8NG50 284 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 DEPDC1BQ8WUY9 529 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 KRT35Q92764 455 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 KLHL29Q96CT2 875 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 CCDC138Q96M89 665 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 APOL6Q9BWW8 343 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 PUS7LQ9H0K6 701 aaKnown RBP11.46□□□□□ -0.57
ACTN1-216ENST00000556083 TMEM60Q9H2L4 133 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 BFARQ9NZS9 450 aa11.46□□□□□ -0.57
ACTN1-216ENST00000556083 CFAP69A5D8W1 941 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 CTNND1O60716 968 aaKnown RBP11.46□□□□□ -0.58
ACTN1-216ENST00000556083 BAG2O95816 211 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 GPC3P51654 580 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 PADI6Q6TGC4 694 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 CMTR1Q8N1G2 835 aaKnown RBP11.46□□□□□ -0.58
ACTN1-216ENST00000556083 C7orf31Q8N865 590 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 PARD3BQ8TEW8 1205 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 CENPKQ9BS16 269 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 ISCA1Q9BUE6 129 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 FRMD8Q9BZ67 464 aaPredicted RBP11.46□□□□□ -0.58
ACTN1-216ENST00000556083 STK38LQ9Y2H1 464 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 ABCC3O15438 1527 aa11.46□□□□□ -0.58
ACTN1-216ENST00000556083 H3BRJ5 948 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 APOEP02649 317 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 NR3C1P04150 777 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SOX5P35711 763 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 MDM2Q00987 491 aaPredicted RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 ZNF699Q32M78 642 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 ADCK5Q3MIX3 580 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SUSD4Q5VX71 490 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 PDCD7Q8N8D1 485 aaKnown RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 OR6B3Q8NGW1 331 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 TSSK1BQ9BXA7 367 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 ZNF302Q9NR11 478 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 BARHL2Q9NY43 387 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 KCNH4Q9UQ05 1017 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 MOCS3O95396 460 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 APOA4P06727 396 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 CCDC15Q0P6D6 951 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 DHX34Q14147 1143 aaKnown RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 NBPF10Q6P3W6 841 aaKnown RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SPICE1Q8N0Z3 855 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 PGBD4Q96DM1 585 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 ZFP91Q96JP5 570 aaPredicted RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 YY1AP1Q9H869 796 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SEC31BQ9NQW1 1179 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SPTLC3Q9NUV7 552 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 WDR70Q9NW82 654 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 PDXKO00764 312 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 GAS2O43903 313 aaKnown RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 GDF11O95390 407 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SBK1Q52WX2 424 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 TTC8Q8TAM2 541 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 GPT2Q8TD30 523 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 KIF9Q9HAQ2 790 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SUCLA2Q9P2R7 463 aaPredicted RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 FAF1Q9UNN5 650 aaPredicted RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 MEIS1O00470 390 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 CTIFO43310 598 aaKnown RBP11.45□□□□□ -0.58
ACTN1-216ENST00000556083 EFCAB14O75071 495 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 RALAP11233 206 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 FCER1AP12319 257 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 TMTC4Q5T4D3 741 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 TRIM67Q6ZTA4 783 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 SCYL3Q8IZE3 742 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 DNAJC12Q9UKB3 198 aa11.45□□□□□ -0.58
ACTN1-216ENST00000556083 MXD4Q14582 209 aaPredicted RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 PROSER3Q2NL68 480 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 EFHC2Q5JST6 749 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 MTHFD1LQ6UB35 978 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 ZNF589Q86UQ0 364 aaPredicted RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 RHOT1Q8IXI2 618 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 PPWD1Q96BP3 646 aaKnown RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 UIMC1Q96RL1 719 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 TMEM47Q9BQJ4 181 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 ATP8A1Q9Y2Q0 1164 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 DPYSL4O14531 572 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 COPEO14579 308 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 MYO1DO94832 1006 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 GH2P01242 217 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 EIF2AK2P19525 551 aaKnown RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 ATP6V1E1P36543 226 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 KRT31Q15323 416 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 UGP2Q16851 508 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 RASIP1Q5U651 963 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 RNF146Q9NTX7 359 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 NSMCE4AQ9NXX6 385 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 CNOT8Q9UFF9 292 aaKnown RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 MINPP1Q9UNW1 487 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 P4HA2O15460 535 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 KDM1AO60341 852 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 SMIM24O75264 130 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 ESRRAP11474 423 aaPredicted RBP11.44□□□□□ -0.58
ACTN1-216ENST00000556083 PEX3P56589 373 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 CCSER1Q9C0I3 900 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 PCDHA10Q9Y5I2 948 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 SPDYE2BA6NHP3 402 aa11.44□□□□□ -0.58
ACTN1-216ENST00000556083 SPAG6O75602 509 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 73.9 ms