RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 WRAP73Q9P2S5 460 aaPredicted RBP23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 LRFN2Q9ULH4 789 aa23.05■■□□□ 1.28
CCDC88C-210ENST00000555995 DARSP14868 501 aaKnown RBP23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 IGFBP4P22692 258 aa23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 SFPQP23246 707 aaKnown RBP eCLIP23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 SARSP49591 514 aaKnown RBP23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 FXR2P51116 673 aaKnown RBP eCLIP23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 NPEPPSP55786 919 aa23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 LARP1BQ659C4 914 aaKnown RBP23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 SLC24A5Q71RS6 500 aa23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 FIBCD1Q8N539 461 aa23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 PSPC1Q8WXF1 523 aaKnown RBP23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 LINC01599Q8WXQ3 324 aa23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 POLR3CQ9BUI4 534 aaPredicted RBP23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 RGS18Q9NS28 235 aa23.04■■□□□ 1.28
CCDC88C-210ENST00000555995 ASAP2O43150 1006 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 DGAT1O75907 488 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 ZSCAN20P17040 1043 aaPredicted RBP23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 POU3F3P20264 500 aaPredicted RBP23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 PRPHP41219 470 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 TECP42680 631 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 EMC2Q15006 297 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 RHPN2Q8IUC4 686 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 MTRQ99707 1265 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 ADAM2Q99965 735 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 SH2D3AQ9BRG2 576 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 TMX1Q9H3N1 280 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 COL4A3BPQ9Y5P4 624 aa23.03■■□□□ 1.28
CCDC88C-210ENST00000555995 ARHGEF15O94989 841 aa23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 CMTR2Q8IYT2 770 aaKnown RBP23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 FBXO22Q8NEZ5 403 aa23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 INTS4Q96HW7 963 aaKnown RBP23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 CERS4Q9HA82 394 aa23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 RC3H2Q9HBD1 1191 aaKnown RBP23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 ATP6V0A4Q9HBG4 840 aa23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 DACT1Q9NYF0 836 aa23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 LMCD1Q9NZU5 365 aa23.02■■□□□ 1.28
CCDC88C-210ENST00000555995 DGKIO75912 1065 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 RPA1P27694 616 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 PTGDRQ13258 359 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 DRP2Q13474 957 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 PDIA5Q14554 519 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 MXD4Q14582 209 aaPredicted RBP23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 BRAPQ7Z569 592 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 RTN4RL1Q86UN2 441 aaPredicted RBP23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 NACC1Q96RE7 527 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 ELAC1Q9H777 363 aaKnown RBP23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 PCDHB7Q9Y5E2 793 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 PCDHB6Q9Y5E3 794 aa23.01■■□□□ 1.27
CCDC88C-210ENST00000555995 HOXA2O43364 376 aa23■■□□□ 1.27
CCDC88C-210ENST00000555995 TOB1P50616 345 aaPredicted RBP23■■□□□ 1.27
CCDC88C-210ENST00000555995 BTG3Q14201 252 aaPredicted RBP23■■□□□ 1.27
CCDC88C-210ENST00000555995 ADGRE1Q14246 886 aa23■■□□□ 1.27
CCDC88C-210ENST00000555995 SLC17A8Q8NDX2 589 aa23■■□□□ 1.27
CCDC88C-210ENST00000555995 ZNF689Q96CS4 500 aaPredicted RBP23■■□□□ 1.27
CCDC88C-210ENST00000555995 NLRP4Q96MN2 994 aa23■■□□□ 1.27
CCDC88C-210ENST00000555995 EIF4ENIF1Q9NRA8 985 aaKnown RBP23■■□□□ 1.27
CCDC88C-210ENST00000555995 CHST12Q9NRB3 414 aa23■■□□□ 1.27
CCDC88C-210ENST00000555995 LRWD1Q9UFC0 647 aa23■■□□□ 1.27
CCDC88C-210ENST00000555995 DBR1Q9UK59 544 aaKnown RBP23■■□□□ 1.27
CCDC88C-210ENST00000555995 CDH23Q9H251 3354 aa23■■□□□ 1.27
CCDC88C-210ENST00000555995 A0A087WZ62 844 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 C9IYK1 514 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 K7ELQ4 463 aaPredicted RBP22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 MGEA5O60502 916 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 BMP15O95972 392 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 RB1P06400 928 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 RARRES1P49788 294 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 TFDP1Q14186 410 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 DSC3Q14574 896 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 PCBP1Q15365 356 aaKnown RBP eCLIP22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 SRGAP1Q7Z6B7 1085 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 CATSPER3Q86XQ3 398 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 CRIPAKQ8N1N5 446 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 C4orf32Q8N8J7 132 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 RSPH1Q8WYR4 309 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 FDXACB1Q9BRP7 624 aaPredicted RBP22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 TMEM161AQ9NX61 479 aa22.99■■□□□ 1.27
CCDC88C-210ENST00000555995 CHD7Q9P2D1 2997 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 SPATA31C1P0DKV0 1188 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 GRB10Q13322 594 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 NBR1Q14596 966 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 PTPROQ16827 1216 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 DTHD1Q6ZMT9 781 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 TMEM192Q8IY95 271 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 IGSF22Q8N9C0 903 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 ZNF579Q8NAF0 562 aaKnown RBP22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 MCPH1Q8NEM0 835 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 PRPF31Q8WWY3 499 aaKnown RBP22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 TMEM143Q96AN5 459 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 MTUS1Q9ULD2 1270 aa22.98■■□□□ 1.27
CCDC88C-210ENST00000555995 FNDC1Q4ZHG4 1894 aaPredicted RBP22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 COL6A3P12111 3177 aa22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 EPOPA6NHQ4 379 aa22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 SKIP12755 728 aa22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 PHKA2P46019 1235 aa22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 POU5F1BQ06416 359 aa22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 LAMTOR4Q0VGL1 99 aa22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 EPC2Q52LR7 807 aa22.97■■□□□ 1.27
CCDC88C-210ENST00000555995 ARL6IP4Q66PJ3 421 aaKnown RBP22.97■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms