RNA–Protein interactions for RNA: ENST00000551655.1

VPS29-209, Transcript of VPS29, retromer complex component, humanhuman

TSL 5

Gene VPS29, Length 766 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-209ENST00000551655 TRAF1Q13077 416 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 ECHDC2Q86YB7 292 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 TMEM169Q96HH4 297 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 SLC9A2Q9UBY0 812 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 PATJQ8NI35 1801 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 FRYQ5TBA9 3013 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 MIA3Q5JRA6 1907 aa16.53■□□□□ 0.24
VPS29-209ENST00000551655 HOXA2O43364 376 aa16.52■□□□□ 0.24
VPS29-209ENST00000551655 CUL5Q93034 780 aa16.52■□□□□ 0.24
VPS29-209ENST00000551655 CDHR1Q96JP9 859 aa16.52■□□□□ 0.24
VPS29-209ENST00000551655 MYADMQ96S97 322 aa16.52■□□□□ 0.24
VPS29-209ENST00000551655 VN1R3Q9BXE9 311 aa16.52■□□□□ 0.24
VPS29-209ENST00000551655 ARHGEF3Q9NR81 526 aa16.52■□□□□ 0.24
VPS29-209ENST00000551655 PCDHB15Q9Y5E8 787 aa16.52■□□□□ 0.24
VPS29-209ENST00000551655 DOCK8Q8NF50 2099 aa16.52■□□□□ 0.23
VPS29-209ENST00000551655 GPR32O75388 356 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 CTSAP10619 480 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 SRFP11831 508 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 CRYBB1P53674 252 aaPredicted RBP16.51■□□□□ 0.23
VPS29-209ENST00000551655 PDE1AP54750 535 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 COL9A3Q14050 684 aaPredicted RBP16.51■□□□□ 0.23
VPS29-209ENST00000551655 WTAPQ15007 396 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 UBE2SQ16763 222 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 ODR4Q5SWX8 454 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 PLPPR4Q7Z2D5 763 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 ZNF668Q96K58 619 aaPredicted RBP16.51■□□□□ 0.23
VPS29-209ENST00000551655 KRT23Q9C075 422 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 PARD6AQ9NPB6 346 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 JADE2Q9NQC1 790 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 USP18Q9UMW8 372 aa16.51■□□□□ 0.23
VPS29-209ENST00000551655 ZBTB42B2RXF5 422 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 PIK3CDO00329 1044 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 ZC3H11AO75152 810 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS29-209ENST00000551655 SSBP05455 408 aaKnown RBP eCLIP16.5■□□□□ 0.23
VPS29-209ENST00000551655 SDHBP21912 280 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 TGM1P22735 817 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 ALDH7A1P49419 539 aaKnown RBP16.5■□□□□ 0.23
VPS29-209ENST00000551655 LMNB2Q03252 620 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 PTPN14Q15678 1187 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 PHLDB3Q6NSJ2 640 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 PJA1Q8NG27 643 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 RILPL2Q969X0 211 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 RTKNQ9BST9 563 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 SMG5Q9UPR3 1016 aaKnown RBP16.5■□□□□ 0.23
VPS29-209ENST00000551655 IRAK3Q9Y616 596 aa16.5■□□□□ 0.23
VPS29-209ENST00000551655 FGFR4P22455 802 aa16.49■□□□□ 0.23
VPS29-209ENST00000551655 NT5C2P49902 561 aa16.49■□□□□ 0.23
VPS29-209ENST00000551655 CLCN4P51793 760 aa16.49■□□□□ 0.23
VPS29-209ENST00000551655 ITGB3BPQ13352 177 aaPredicted RBP16.49■□□□□ 0.23
VPS29-209ENST00000551655 BMS1Q14692 1282 aaKnown RBP16.49■□□□□ 0.23
VPS29-209ENST00000551655 LONRF3Q496Y0 759 aa16.49■□□□□ 0.23
VPS29-209ENST00000551655 PPM1JQ5JR12 505 aa16.49■□□□□ 0.23
VPS29-209ENST00000551655 DCLRE1AQ6PJP8 1040 aa16.49■□□□□ 0.23
VPS29-209ENST00000551655 TNPO1Q92973 898 aaKnown RBP16.49■□□□□ 0.23
VPS29-209ENST00000551655 KLHL5Q96PQ7 755 aa16.49■□□□□ 0.23
VPS29-209ENST00000551655 SPATA6Q9NWH7 488 aaPredicted RBP16.49■□□□□ 0.23
VPS29-209ENST00000551655 PRR5-ARHGAP8B1AHC4 643 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 DDX39AO00148 427 aaKnown RBP16.48■□□□□ 0.23
VPS29-209ENST00000551655 C22orf31O95567 290 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 CNPP09543 421 aaKnown RBP16.48■□□□□ 0.23
VPS29-209ENST00000551655 SDSP20132 328 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 KLRC2P26717 231 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 ARHGAP8P85298 464 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 CSTF1Q05048 431 aaKnown RBP16.48■□□□□ 0.23
VPS29-209ENST00000551655 ANKRD45Q5TZF3 282 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 TRMT1LQ7Z2T5 733 aaKnown RBP16.48■□□□□ 0.23
VPS29-209ENST00000551655 DDX53Q86TM3 631 aaKnown RBP16.48■□□□□ 0.23
VPS29-209ENST00000551655 ZNF598Q86UK7 904 aaKnown RBP16.48■□□□□ 0.23
VPS29-209ENST00000551655 IGSF21Q96ID5 467 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 KCNH7Q9NS40 1196 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 MTF2Q9Y483 593 aaPredicted RBP16.48■□□□□ 0.23
VPS29-209ENST00000551655 FAM208BQ5VWN6 2430 aa16.48■□□□□ 0.23
VPS29-209ENST00000551655 CLUHO75153 1309 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 SPTLC1O15269 473 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 B4GALT3O60512 393 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 CCNE2O96020 404 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 CLCN3P51790 818 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 TROAPQ12815 778 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 IMMTQ16891 758 aaKnown RBP16.47■□□□□ 0.23
VPS29-209ENST00000551655 TSSK4Q6SA08 328 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 CWC27Q6UX04 472 aaKnown RBP16.47■□□□□ 0.23
VPS29-209ENST00000551655 METTL13Q8N6R0 699 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 LPPQ93052 612 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 CNNM2Q9H8M5 875 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 MAN1C1Q9NR34 630 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 EPS15L1Q9UBC2 864 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 DNAJB4Q9UDY4 337 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 U3KPZ7 1027 aaPredicted RBP16.47■□□□□ 0.23
VPS29-209ENST00000551655 MYH15Q9Y2K3 1946 aa16.47■□□□□ 0.23
VPS29-209ENST00000551655 SPEGQ15772 3267 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 BACH1O14867 736 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 HBP1O60381 514 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 ZSCAN20P17040 1043 aaPredicted RBP16.46■□□□□ 0.23
VPS29-209ENST00000551655 ATP4AP20648 1035 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 POLGP54098 1239 aaPredicted RBP16.46■□□□□ 0.23
VPS29-209ENST00000551655 MFAP1P55081 439 aaKnown RBP16.46■□□□□ 0.23
VPS29-209ENST00000551655 NONOQ15233 471 aaKnown RBP eCLIP16.46■□□□□ 0.23
VPS29-209ENST00000551655 C15orf39Q6ZRI6 1047 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 PPFIBP1Q86W92 1011 aa16.46■□□□□ 0.23
VPS29-209ENST00000551655 CCDC60Q8IWA6 550 aaPredicted RBP16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms