RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 POLR3GLQ9BT43 218 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 MTA3Q9BTC8 594 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 GP6Q9HCN6 339 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 KNSTRNQ9Y448 316 aa4.74□□□□□ -1.65
LIMA1-206ENST00000550611 PAPPA2Q9BXP8 1791 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 ANKRD31Q8N7Z5 1873 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 TCERG1O14776 1098 aaKnown RBP4.73□□□□□ -1.65
LIMA1-206ENST00000550611 PIP4K2AP48426 406 aaPredicted RBP4.73□□□□□ -1.65
LIMA1-206ENST00000550611 RBM25P49756 843 aaKnown RBP4.73□□□□□ -1.65
LIMA1-206ENST00000550611 EPHB4P54760 987 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 TEFQ10587 303 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 HLFQ16534 295 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 WWC2Q6AWC2 1192 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 GK5Q6ZS86 529 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 MOB2Q70IA6 237 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 ZNF575Q86XF7 245 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 FIBCD1Q8N539 461 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 DEFB123Q8N688 67 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 JDP2Q8WYK2 163 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 DPF3Q92784 378 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 PHACTR3Q96KR7 559 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 PRO3102Q9H379 93 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 DEF6Q9H4E7 631 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 WDR26Q9H7D7 661 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 ADARB2Q9NS39 739 aaKnown RBP4.73□□□□□ -1.65
LIMA1-206ENST00000550611 GPRC5DQ9NZD1 345 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 C11orf21Q9P2W6 132 aa4.73□□□□□ -1.65
LIMA1-206ENST00000550611 KIF7Q2M1P5 1343 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 LAMA2P24043 3122 aaKnown RBP4.72□□□□□ -1.65
LIMA1-206ENST00000550611 AKAP11Q9UKA4 1901 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 ANKRD33BA6NCL7 494 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 PATE3B3GLJ2 98 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 ADM5C9JUS6 153 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 CD3EP07766 207 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 SNRPA1P09661 255 aaKnown RBP4.72□□□□□ -1.65
LIMA1-206ENST00000550611 ZNF165P49910 485 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 GMPSP49915 693 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-206ENST00000550611 INHBEP58166 350 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 ETV3LQ6ZN32 361 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 C2orf69Q8N8R5 385 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 BRF1Q92994 677 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 ZNF428Q96B54 188 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 WWC2-AS2Q96NR7 200 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 CRAMP1Q96RY5 1269 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 VPS33BQ9H267 617 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 GBA2Q9HCG7 927 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-206ENST00000550611 STAP2Q9UGK3 403 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 SCAF8Q9UPN6 1271 aaKnown RBP4.72□□□□□ -1.65
LIMA1-206ENST00000550611 NIP7Q9Y221 180 aaKnown RBP eCLIP4.72□□□□□ -1.65
LIMA1-206ENST00000550611 ZNF652Q9Y2D9 606 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 RWDD3Q9Y3V2 267 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 TCAF1Q9Y4C2 921 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 TRIM17Q9Y577 477 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 COL11A2P13942 1736 aaPredicted RBP4.72□□□□□ -1.65
LIMA1-206ENST00000550611 CLSPNQ9HAW4 1339 aa4.72□□□□□ -1.65
LIMA1-206ENST00000550611 UBR2Q8IWV8 1755 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 ERVV-1B6SEH8 477 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 DDX3XO00571 662 aaKnown RBP eCLIP4.71□□□□□ -1.66
LIMA1-206ENST00000550611 MUSKO15146 869 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 NPHP1O15259 732 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 PPP1R11O60927 126 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-206ENST00000550611 CD247P20963 164 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 PLA2G5P39877 138 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 ITGA1P56199 1179 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 CXCL9Q07325 125 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 FHL2Q14192 279 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 SEZ6Q53EL9 994 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 AXDND1Q5T1B0 1012 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-206ENST00000550611 DCAF15Q66K64 600 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 ZNF585AQ6P3V2 769 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 PKN3Q6P5Z2 889 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 OTOP1Q7RTM1 612 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 MIB1Q86YT6 1006 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 RASAL3Q86YV0 1011 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 PALM2Q8IXS6 379 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 IGDCC4Q8TDY8 1250 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 MBD6Q96DN6 1003 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 FAM122AQ96E09 287 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 FAM161BQ96MY7 647 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 RTFDC1Q9BY42 306 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-206ENST00000550611 COPRSQ9NQ92 184 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 MTMR10Q9NXD2 777 aa4.71□□□□□ -1.66
LIMA1-206ENST00000550611 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP4.71□□□□□ -1.66
LIMA1-206ENST00000550611 POLR2AP24928 1970 aaKnown RBP4.71□□□□□ -1.66
LIMA1-206ENST00000550611 ASTN2O75129 1339 aaPredicted RBP4.71□□□□□ -1.66
LIMA1-206ENST00000550611 SCN7AQ01118 1682 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 COL3A1P02461 1466 aaPredicted RBP4.7□□□□□ -1.66
LIMA1-206ENST00000550611 ABCC12Q96J65 1359 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 NPC1L1Q9UHC9 1359 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 UBE2Q2LH0YL09 131 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 HTATSF1O43719 755 aaKnown RBP4.7□□□□□ -1.66
LIMA1-206ENST00000550611 SORBS3O60504 671 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 RAD17O75943 681 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 ZNF28P17035 718 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 SPDYAQ5MJ70 313 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 SLC10A5Q5PT55 438 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 SUSD4Q5VX71 490 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 ZC3H18Q86VM9 953 aaKnown RBP4.7□□□□□ -1.66
LIMA1-206ENST00000550611 ZNF34Q8IZ26 560 aa4.7□□□□□ -1.66
LIMA1-206ENST00000550611 TAB3Q8N5C8 712 aaPredicted RBP4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms