RNA–Protein interactions for RNA: ENST00000549328.1

CHMP1A-207, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 1,003 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-207ENST00000549328 DIS3L2Q8IYB7 885 aaKnown RBP20.92■□□□□ 0.94
CHMP1A-207ENST00000549328 EXOC8Q8IYI6 725 aa20.92■□□□□ 0.94
CHMP1A-207ENST00000549328 LLPHQ9BRT6 129 aaKnown RBP20.92■□□□□ 0.94
CHMP1A-207ENST00000549328 NSUN3Q9H649 340 aaKnown RBP20.92■□□□□ 0.94
CHMP1A-207ENST00000549328 UBE2ZQ9H832 354 aaPredicted RBP20.92■□□□□ 0.94
CHMP1A-207ENST00000549328 PPME1Q9Y570 386 aa20.92■□□□□ 0.94
CHMP1A-207ENST00000549328 TMEM150BA6NC51 233 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 GRM6O15303 877 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 ZSCAN20P17040 1043 aaPredicted RBP20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 SPIRE1Q08AE8 756 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 DRP2Q13474 957 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 C8orf34Q49A92 452 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 PAN2Q504Q3 1202 aaKnown RBP20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 C4orf19Q8IY42 314 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 NLRP7Q8WX94 980 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 ZSCAN31Q96LW9 406 aaPredicted RBP20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 SCLT1Q96NL6 688 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 ATP6V0A4Q9HBG4 840 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 CYP26B1Q9NR63 512 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 PLAGL2Q9UPG8 496 aa20.91■□□□□ 0.94
CHMP1A-207ENST00000549328 MUC3AQ02505 3323 aa20.9■□□□□ 0.94
CHMP1A-207ENST00000549328 COL19A1Q14993 1142 aa20.9■□□□□ 0.94
CHMP1A-207ENST00000549328 SH2D3AQ9BRG2 576 aa20.9■□□□□ 0.94
CHMP1A-207ENST00000549328 GCOM2Q9BZD3 368 aaPredicted RBP20.9■□□□□ 0.94
CHMP1A-207ENST00000549328 PCDHA12Q9UN75 941 aa20.9■□□□□ 0.94
CHMP1A-207ENST00000549328 MYO7AQ13402 2215 aa20.89■□□□□ 0.94
CHMP1A-207ENST00000549328 NCK2O43639 380 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 GATMP50440 423 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 TCEAL5Q5H9L2 206 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 FAM102BQ5T8I3 360 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 OTUD6AQ7L8S5 288 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 ZNF410Q86VK4 478 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 SLC7A3Q8WY07 619 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 ZNF668Q96K58 619 aaPredicted RBP20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 KIF2CQ99661 725 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 INO80BQ9C086 356 aaPredicted RBP20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 ZSWIM4Q9H7M6 989 aa20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 SUCLA2Q9P2R7 463 aaPredicted RBP20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 WRAP73Q9P2S5 460 aaPredicted RBP20.89■□□□□ 0.93
CHMP1A-207ENST00000549328 TCF20Q9UGU0 1960 aaKnown RBP20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 HOXA2O43364 376 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 IBSPP21815 317 aaPredicted RBP20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 SAFBQ15424 915 aaKnown RBP eCLIP20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 CALCRLQ16602 461 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 LEXMQ3ZCV2 418 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 PLA2G4FQ68DD2 849 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 NCAPH2Q6IBW4 605 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 CCDC83Q8IWF9 413 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 SPPL3Q8TCT6 385 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 PABPC5Q96DU9 382 aaKnown RBP20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 CEP170P1Q96L14 293 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 LXNQ9BS40 222 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 DHX33Q9H6R0 707 aaKnown RBP20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 ALG13Q9NP73 1137 aaKnown RBP20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 CHST12Q9NRB3 414 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 SH2B1Q9NRF2 756 aaPredicted RBP20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 AAASQ9NRG9 546 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 DACT1Q9NYF0 836 aa20.88■□□□□ 0.93
CHMP1A-207ENST00000549328 A0A0U1RQF3 1178 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 TBKBP1A7MCY6 615 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 ITGB1P05556 798 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 KCNA5P22460 613 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 YWHABP31946 246 aaKnown RBP20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 RFC5P40937 340 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 NPEPPSP55786 919 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 HMGN5P82970 282 aaKnown RBP20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 ECHDC2Q86YB7 292 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 RHPN2Q8IUC4 686 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 KLHL23Q8NBE8 558 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 TMEM117Q9H0C3 514 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 RGL1Q9NZL6 768 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 PCDHB12Q9Y5F1 795 aa20.87■□□□□ 0.93
CHMP1A-207ENST00000549328 FNDC1Q4ZHG4 1894 aaPredicted RBP20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 A0A087WZ62 844 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 GAS2O43903 313 aaKnown RBP20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 NEMFO60524 1076 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 SLITRK3O94933 977 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 EOMESO95936 686 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 SFPQP23246 707 aaKnown RBP eCLIP20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 RBM25P49756 843 aaKnown RBP20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 CAMK1Q14012 370 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 CSPP1Q1MSJ5 1256 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 NEK9Q8TD19 979 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 DYDC2Q96IM9 177 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 C8orf76Q96K31 380 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 MTMR9Q96QG7 549 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 HSD17B14Q9BPX1 270 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 FDXACB1Q9BRP7 624 aaPredicted RBP20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 TRAIPQ9BWF2 469 aa20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 TTC12Q9H892 705 aaPredicted RBP20.86■□□□□ 0.93
CHMP1A-207ENST00000549328 BDP1A6H8Y1 2624 aa20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 LYPLA2O95372 231 aa20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 FGFR1P11362 822 aa20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 FGFR4P22455 802 aa20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 FOSBP53539 338 aa20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 POLGP54098 1239 aaPredicted RBP20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 UBE3AQ05086 875 aa20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 PUS10Q3MIT2 529 aaKnown RBP20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 SPOUT1Q5T280 376 aaKnown RBP20.85■□□□□ 0.93
CHMP1A-207ENST00000549328 ZNF579Q8NAF0 562 aaKnown RBP20.85■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms