RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 ZNF862O60290 1169 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 TBX10O75333 385 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 VTNP04004 478 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 PSAPP07602 524 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 IFNAR1P17181 557 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 PLA2G5P39877 138 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 CRYBB1P53674 252 aaPredicted RBP9.58□□□□□ -0.88
USP28-215ENST00000545608 EVCP57679 992 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 FAM189BP81408 668 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 AKAP17AQ02040 695 aaKnown RBP9.58□□□□□ -0.88
USP28-215ENST00000545608 ZP2Q05996 745 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 ADAM15Q13444 863 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 PADI6Q6TGC4 694 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 SLC24A5Q71RS6 500 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 SMAP1Q8IYB5 467 aaPredicted RBP9.58□□□□□ -0.88
USP28-215ENST00000545608 METTL13Q8N6R0 699 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 POF1BQ8WVV4 589 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 PHOX2BQ99453 314 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 OSMRQ99650 979 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 RNF26Q9BY78 433 aaPredicted RBP9.58□□□□□ -0.88
USP28-215ENST00000545608 C1orf112Q9NSG2 853 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 HCSTQ9UBK5 93 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 PCDHGC5Q9Y5F6 944 aa9.58□□□□□ -0.88
USP28-215ENST00000545608 REV3LO60673 3130 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 DENND3A2RUS2 1198 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 TBKBP1A7MCY6 615 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 MSH4O15457 936 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 FGFR1P11362 822 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 PSMA5P28066 241 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 CLCN3P51790 818 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 TOB2Q14106 344 aaPredicted RBP9.57□□□□□ -0.88
USP28-215ENST00000545608 DSC3Q14574 896 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 SMAD2Q15796 467 aaKnown RBP9.57□□□□□ -0.88
USP28-215ENST00000545608 ODR4Q5SWX8 454 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 EFCAB12Q6NXP0 572 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 RBM23Q86U06 439 aaKnown RBP9.57□□□□□ -0.88
USP28-215ENST00000545608 ADHFE1Q8IWW8 467 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 LRRC71Q8N4P6 559 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 LINC01465Q8N7H1 131 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 CCDC148Q8NFR7 591 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 BICD2Q8TD16 824 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 GJA10Q969M2 543 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 FAM122AQ96E09 287 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 CCDC136Q96JN2 1154 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 ZNF668Q96K58 619 aaPredicted RBP9.57□□□□□ -0.88
USP28-215ENST00000545608 ADAMTS10Q9H324 1103 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 ZSWIM6Q9HCJ5 1215 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 DISC1Q9NRI5 854 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 TYW1Q9NV66 732 aaKnown RBP9.57□□□□□ -0.88
USP28-215ENST00000545608 CLEC1BQ9P126 229 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 PRKAG3Q9UGI9 489 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 FAM50BQ9Y247 325 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 SAMM50Q9Y512 469 aa9.57□□□□□ -0.88
USP28-215ENST00000545608 RALGAPA2Q2PPJ7 1873 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 NLRC5Q86WI3 1866 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 WDR64B1ANS9 1081 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 MAGEB2O15479 319 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 DCXO43602 365 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 ALADP13716 330 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 NRIP1P48552 1158 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 NDUFV1P49821 464 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 USP11P51784 963 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 NLRP11P59045 1033 aaKnown RBP9.56□□□□□ -0.88
USP28-215ENST00000545608 NLRP5P59047 1200 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 SMAD4Q13485 552 aaKnown RBP9.56□□□□□ -0.88
USP28-215ENST00000545608 UGCGQ16739 394 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 SPOUT1Q5T280 376 aaKnown RBP9.56□□□□□ -0.88
USP28-215ENST00000545608 FAM43BQ6ZT52 329 aaPredicted RBP9.56□□□□□ -0.88
USP28-215ENST00000545608 RUFY3Q7L099 469 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 EFHBQ8N7U6 833 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 TBCKQ8TEA7 893 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 SLC5A5Q92911 643 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 MSLNLQ96KJ4 702 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 UNC45AQ9H3U1 944 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 CWH43Q9H720 699 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 ATP6V0A4Q9HBG4 840 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 SH3GLB2Q9NR46 395 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 NRBP2Q9NSY0 501 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 RNF19AQ9NV58 838 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 TMEM161AQ9NX61 479 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 TCEAL9Q9UHQ7 104 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 CD207Q9UJ71 328 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 CEP131Q9UPN4 1083 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 AKT3Q9Y243 479 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 HCN4Q9Y3Q4 1203 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 PCDHB12Q9Y5F1 795 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 ADGRG1Q9Y653 693 aa9.56□□□□□ -0.88
USP28-215ENST00000545608 XIRP2A4UGR9 3374 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 PRR33A8MZF0 331 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 PER2O15055 1255 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 CHMP2AO43633 222 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 GAS7O60861 476 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 PSMD10O75832 226 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 FGF18O76093 207 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 REC8O95072 547 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 STBD1O95210 358 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 EYA4O95677 639 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 GLP2RO95838 553 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 NUDT7P0C024 238 aa9.55□□□□□ -0.88
USP28-215ENST00000545608 EIF4BP23588 611 aaKnown RBP9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms